View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20394_low_9 (Length: 233)
Name: NF20394_low_9
Description: NF20394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20394_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 5522462 - 5522252
Alignment:
| Q |
14 |
aatatagtttttgtcatgtggtgcaatttatatatttggtatctcatggaaagaaagtaaatgaatgtctccatgtgacttagtta---gcatgcatgtg |
110 |
Q |
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| T |
5522462 |
aatatagtttttgtcatgtggtgcaatttatatatttggtatctcatggaaagaaagtaaatgaatgtctccatgtgacttagttattagcatgcatgtg |
5522363 |
T |
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| Q |
111 |
gtcattttggaagaatcttgagtatgtggttttcgatgataaggaacgtcaattaaattcacttatggacgtggttaaattactttgtatggtcatagat |
210 |
Q |
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| T |
5522362 |
gtcattttggaagaattttaagtatgtggttttcaatgataaggaacgtcaattagattcatttattgacgtggttaaattactttgtatggtcatagat |
5522263 |
T |
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| Q |
211 |
taagtctaaag |
221 |
Q |
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| T |
5522262 |
taagtctaaag |
5522252 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 42785271 - 42785332
Alignment:
| Q |
22 |
ttttgtcatgtggtgcaatttatatatttggtatctcatggaaagaaagtaaatgaatgtct |
83 |
Q |
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| T |
42785271 |
ttttgtcatgtggtgtaatttatagatttgatatctcatggaaagaaattaaaagattgtct |
42785332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 25499090 - 25499133
Alignment:
| Q |
17 |
atagtttttgtcatgtggtgcaatttatatatttggtatctcat |
60 |
Q |
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| T |
25499090 |
atagtttttgtcatgtgatgcaatttatagatttggtatctcat |
25499133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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