View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_high_13 (Length: 321)
Name: NF20395_high_13
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 165 - 303
Target Start/End: Original strand, 35774674 - 35774812
Alignment:
| Q |
165 |
gagaaggatatggaaaaaggttttcaaattattaattttttgctatagcttttcaaattggttaatattttggtacatcctagtttgaagatgtatcatg |
264 |
Q |
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| T |
35774674 |
gagaaggatatggaaaaaggttttcaaatcattaattttttgctatagcttttcaaattggttaatattttggtacatcctagtttgaagatgtatcatg |
35774773 |
T |
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| Q |
265 |
tgacatttatgacatggccctcatttatctccgcatctt |
303 |
Q |
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| T |
35774774 |
tgacatttatgacatggccctcatttatctccgcatctt |
35774812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35774504 - 35774610
Alignment:
| Q |
1 |
taaattaaagatcttcaccaataaatttttggccaagctcggccaagtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttg |
100 |
Q |
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| T |
35774504 |
taaatcaaagatcttcaccaataaatttttggccaagctcggccaagtgtgacattttggcagactcctccttcgaagttggagtctgtgttgagacttg |
35774603 |
T |
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| Q |
101 |
atgtctc |
107 |
Q |
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||||||| |
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| T |
35774604 |
atgtctc |
35774610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 27490294 - 27490247
Alignment:
| Q |
47 |
gtgtgacattttggcagactcctccttcaaagttggagtctgtgttga |
94 |
Q |
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| T |
27490294 |
gtgtgacatattggcagactcctccttcagagttggagtcggtgttga |
27490247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 16697888 - 16697830
Alignment:
| Q |
47 |
gtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatgtc |
105 |
Q |
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| T |
16697888 |
gtgtgactttttggcaggctcctccgtcagagttgaagttagtgttgagacttgatgtc |
16697830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 4421783 - 4421841
Alignment:
| Q |
47 |
gtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatgtc |
105 |
Q |
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| T |
4421783 |
gtgtgaccttttggcagactcctccatcgaagttggaggcagtgttgaggcttgatgtc |
4421841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 35388646 - 35388588
Alignment:
| Q |
45 |
aagtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatg |
103 |
Q |
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| T |
35388646 |
aagtgtgacattttgacagacttctcattcatagttgaagtcagtgttgaggcttgatg |
35388588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 9126951 - 9126895
Alignment:
| Q |
47 |
gtgtgacattttggcagactcctccttcaaagttggagtctgtgttgagacttgatg |
103 |
Q |
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| T |
9126951 |
gtgtggcattttagcaaactcctccttcaaagtgggaatcggtgttgaggcttgatg |
9126895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 8063208 - 8063253
Alignment:
| Q |
47 |
gtgtgacattttggcagactcctccttcaaagttggagtctgtgtt |
92 |
Q |
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| T |
8063208 |
gtgtgacatattgacagactcctccttcagagttggagtcagtgtt |
8063253 |
T |
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