View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_high_17 (Length: 270)
Name: NF20395_high_17
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_high_17 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 9301564 - 9301817
Alignment:
| Q |
16 |
atctgtcctttcgaggtgatacaagtccatacaaccaaaattttcaagagaactccatccaccttattcatcttaaatttaagttatactaatgattttt |
115 |
Q |
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| T |
9301564 |
atctgtcctttcgaggtgatacaagtccatacaaccaaaattttcaagagaactccatccatcttattcatcttaaatttaagttatactaatgattttt |
9301663 |
T |
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| Q |
116 |
gtggtcaatataaatctaacaaggtattttcatatatataacgcctctgggtcttgagagtaaaaatcattgctgccatattcaaaatcattcctagggt |
215 |
Q |
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| T |
9301664 |
gtggtcaatataaatctaacaaggtattttcatatatataacgcctctgggtcttaagagtaaaaattattgctgccttattc-aaatcattcctagggt |
9301762 |
T |
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| Q |
216 |
agttaggatcattcttttcctaactcttggaataaacaagaatgtcatcaattaa |
270 |
Q |
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| T |
9301763 |
agttaggatcattcttttcctaactcttggaataaacaagaatgtcatcaattaa |
9301817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 12406330 - 12406387
Alignment:
| Q |
210 |
tagggtagttaggatcattcttttcctaactcttggaataaacaagaatgtcatcaat |
267 |
Q |
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| T |
12406330 |
taggatagtttggatcattcttttcttaactcttggaataaacaagaatgtcatcaat |
12406387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 12406179 - 12406225
Alignment:
| Q |
51 |
caaaattttcaagagaactccatccaccttattcatcttaaatttaa |
97 |
Q |
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| T |
12406179 |
caaaaatttcgagagaactccatccaccttatttgtcttaaatttaa |
12406225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 27005356 - 27005287
Alignment:
| Q |
16 |
atctgtcctttcgaggtgatacaagtccatacaaccaaaattttcaagagaactccatccaccttattca |
85 |
Q |
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| T |
27005356 |
atctgtccttccgaggtgatacaggtctatacaaccaaaattttcaagagaactccatccaccttattca |
27005287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 16103727 - 16103673
Alignment:
| Q |
210 |
tagggtagttaggatcattcttttcctaactcttggaataaacaagaatgtcatc |
264 |
Q |
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| T |
16103727 |
taggatagtttggatcattactttcttaactcttggaataaacaagaatgtcatc |
16103673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 7963234 - 7963286
Alignment:
| Q |
215 |
tagttaggatcattcttttcctaactcttggaataaacaagaatgtcatcaat |
267 |
Q |
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| T |
7963234 |
tagtttggatcatacctttctttactcttggaataaacaagaatgtcatcaat |
7963286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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