View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_high_19 (Length: 259)
Name: NF20395_high_19
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_high_19 |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 19310810 - 19310948
Alignment:
| Q |
107 |
tttttgcataattagaaagagatgatgagattccaattaacactatttgcattaatgtcttccaacaagttagtgtaacacccttgaaccccacaagcaa |
206 |
Q |
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| T |
19310810 |
tttttgcataattagaaagagatgatgagattccaattaacactatttgcattaatgacttctaacaagttagtgtaacacccttgaaccccacaagcaa |
19310909 |
T |
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| Q |
207 |
tagttcatgttgataaatcaattaatcaaaagagtataa |
245 |
Q |
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| T |
19310910 |
tagttcatgttgataaatcaattaatcaaaagagtataa |
19310948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 19310616 - 19310705
Alignment:
| Q |
18 |
aatctcagatgacaactcaacttgctcagagtttgaagatgcaacacaattgaataatgaagatatagaagttgaggatcgtgcagtggt |
107 |
Q |
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| T |
19310616 |
aatctcagatgacagctcaacttgctcagagtttatagatgcaacacaattgaataatgaagatatagaagttgaggatcgtgcagtggt |
19310705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 5713014 - 5712957
Alignment:
| Q |
182 |
taacacccttgaaccccacaagcaatagttcatgttgataaatcaattaatcaaaaga |
239 |
Q |
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| T |
5713014 |
taacacccttgaaccccacaagcaatatttaatgcaaataaatcaattattcaaaaga |
5712957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 18448525 - 18448584
Alignment:
| Q |
182 |
taacacccttgaaccccacaagcaatagttcatgttgataaatcaattaatcaaaagagt |
241 |
Q |
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| T |
18448525 |
taacacccttgaaccccacaagcagtatttaatgcaaataaatcatttaatcaaaagagt |
18448584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 8816 - 8866
Alignment:
| Q |
182 |
taacacccttgaaccccacaagcaatagttcatgttgataaatcaattaat |
232 |
Q |
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| T |
8816 |
taacacccttgaaccccacaagcaatatttgatgcaaataaatcaattaat |
8866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 20151463 - 20151524
Alignment:
| Q |
180 |
tgtaacacccttgaaccccacaagcaatagttcatgttgataaatcaattaatcaaaagagt |
241 |
Q |
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| T |
20151463 |
tgtaacacccttgaatcccacaagcaatatttaatgcaagtaaatcatttaatcaaaagagt |
20151524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 22181369 - 22181308
Alignment:
| Q |
180 |
tgtaacacccttgaaccccacaagcaatagttcatgttgataaatcaattaatcaaaagagt |
241 |
Q |
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| T |
22181369 |
tgtaacacccttgaatcccacaagcaatatttaatgcaagtaaatcatttaatcaaaagagt |
22181308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 15551290 - 15551230
Alignment:
| Q |
182 |
taacacccttgaacccc-acaagcaatagttcatgttgataaatcaattaatcaaaagagt |
241 |
Q |
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| T |
15551290 |
taacacccttgaacccccacaagcaatatttaatgcaaataaatcatttaatcaaaagagt |
15551230 |
T |
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