View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20395_high_21 (Length: 250)
Name: NF20395_high_21
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_high_21 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 92 - 250
Target Start/End: Original strand, 6272753 - 6272908
Alignment:
| Q |
92 |
ccatgctgaagcaaatattattattcggtggtactaattaaataatatgacaaaattactttttaagtttaaggtgaaacatgaaagctgcatatgaaat |
191 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6272753 |
ccatgctgaagcaaatatt---attcggttttactaattaaataatatgacaaaattaatttttaagtttaaggtgaaacatgaaagctgcatatgaaat |
6272849 |
T |
|
| Q |
192 |
caatggtctagaatggtacaagtacgacagataaaatatttcttacattgatgttaagc |
250 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6272850 |
caatggtctggaatggtacaagtacgacagataaaatatttcttacattgatgttaagc |
6272908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University