View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20395_high_26 (Length: 236)
Name: NF20395_high_26
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_high_26 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33652563 - 33652342
Alignment:
| Q |
1 |
acattgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33652563 |
acattgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataaga |
33652464 |
T |
|
| Q |
101 |
ataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttgttgtattgtaaatcatattgaaagttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33652463 |
ataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttgttgtattgtaaatcatattgaaagttg |
33652364 |
T |
|
| Q |
201 |
tgatgtttgctttcatgttgat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33652363 |
tgatgtttgctttcatgttgat |
33652342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 30922348 - 30922179
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||| ||||||| |||||||| | |||||||||| |||||||||| |
|
|
| T |
30922348 |
attgaattatttgttgttattgagcatactcattcatgtgacatggtagtcatgtggaa-gattgtaaatagtttctatcttctcacaccttataagaat |
30922250 |
T |
|
| Q |
103 |
aagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
173 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30922249 |
aagaccatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
30922179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 42922314 - 42922483
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
42922314 |
attgaattatttgttgttattgaacatactcattcatgtgacatggtagtcatgtggaa-gattatagatagtttctagcttctcacaccttataagaat |
42922412 |
T |
|
| Q |
103 |
aagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
173 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42922413 |
aagaccatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
42922483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 34325432 - 34325601
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| || |||||||||| |
|
|
| T |
34325432 |
attgaattatttgttgttattgaacatactcattcatgtgacatggtagtcatgtggaa-gattgtagatagtttctagcttctcataccttataagaat |
34325530 |
T |
|
| Q |
103 |
aagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34325531 |
aagaccatgtggattggaattgctatcatactaaggaaagataccaagtataatacattttccatgttttg |
34325601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 2626093 - 2625993
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||| |||| ||||||||||| | |||||||||| |||||||||| |
|
|
| T |
2626093 |
attgaattatttgttgttattgaacatgctcattcatgtgacatgatagtcatgtgga-agattatagatagtttctaacttctcacaccttataagaat |
2625995 |
T |
|
| Q |
103 |
aa |
104 |
Q |
| |
|
|| |
|
|
| T |
2625994 |
aa |
2625993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 22976996 - 22976896
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||||||||| || ||||||||| |||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
22976996 |
attgaattatttgttgttattaaacatgctcattcatgtgacatgatagtcatgtgga-agattgtagatagtttctaacttctcacaccttataagaat |
22976898 |
T |
|
| Q |
103 |
aa |
104 |
Q |
| |
|
|| |
|
|
| T |
22976897 |
aa |
22976896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 23811406 - 23811506
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| ||||| |||| ||||||||||||||||| || ||||||||| |||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
23811406 |
attgaattatttgttgttattaaacatgctcattcatgtgacatgatagtcatgtgga-agattgtagatagtttctaacttctcacaccttataagaat |
23811504 |
T |
|
| Q |
103 |
aa |
104 |
Q |
| |
|
|| |
|
|
| T |
23811505 |
aa |
23811506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 47388441 - 47388272
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
47388441 |
attgaattatttgttgttattgaacatactcattcatgtgacatggtagtcatgtggaa-gattgtaggtagtttctagcttctcacaccttataagaat |
47388343 |
T |
|
| Q |
103 |
aagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
173 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47388342 |
aagaccatgtggattgaaattgctatcatactaaagaaggataccaagtatattacattttccatgttttg |
47388272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 173
Target Start/End: Original strand, 3753434 - 3753603
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||| |||| || | ||||||||||||||| |||||||||||| |||||| ||| |
|
|
| T |
3753434 |
attgaattatttgttgttattgaacatactcattcatgtgacatggtagtcatatgaaa-gattgtagatagtttttagcttctcacaccttataacaat |
3753532 |
T |
|
| Q |
103 |
aagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
173 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3753533 |
atgaccatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
3753603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 172
Target Start/End: Complemental strand, 45287678 - 45287511
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||| |||| ||||||| ||| |||| ||||||| |||||||||| |
|
|
| T |
45287678 |
attgaattatttgttgttattgaacatactcattcatgtgacatc-tagtcatgtggaa-gattatagatagcttctagctcctcacaccttataagaat |
45287581 |
T |
|
| Q |
103 |
aagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgtttt |
172 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45287580 |
aagaccatgtggattgaaattgctatcatattaaggaaggataccaagtataacacattttccatgtttt |
45287511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 19252246 - 19252411
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcat----gtgacatggtaatcat--gtggatcgattgtagatagtttcgagcttctcacacattat |
96 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||||||||| |||| ||||| |||||||||||||||| | |||||||||| |||| |
|
|
| T |
19252246 |
attgaattatttgttgttattgaacatactcattcattcatgtgacatggtagtcatatgtggaa-gattgtagatagtttctaacttctcacaccttat |
19252344 |
T |
|
| Q |
97 |
aagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacatttt |
163 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19252345 |
aacaataagaccatgtggattggaattgctatcatactaaggaaggataccaagcataatacatttt |
19252411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 19325430 - 19325595
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcat----gtgacatggtaatcat--gtggatcgattgtagatagtttcgagcttctcacacattat |
96 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||||||||| |||| ||||| |||||||||||||||| | |||||||||| |||| |
|
|
| T |
19325430 |
attgaattatttgttgttattgaacatactcattcattcatgtgacatggtagtcatatgtggaa-gattgtagatagtttctaacttctcacaccttat |
19325528 |
T |
|
| Q |
97 |
aagaataagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacatttt |
163 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19325529 |
aacaataagaccatgtggattggaattgctatcatactaaggaaggataccaagcataatacatttt |
19325595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 4802549 - 4802380
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||| | |||||||||||||||| |||| ||| ||||| |||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
4802549 |
attgaattatttgttgttattgaagatactcattcatgtgacacggtagtcacgtggaa-gattgtagatagtttctagcttctcacaccttataagaat |
4802451 |
T |
|
| Q |
103 |
aagatcatgtggattggaattgctatcatactaaggaaggataccaagtataatacattttccatgttttg |
173 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4802450 |
aagaccatgtggattgaaattgctatcatatcaaggaaggataccaagtataatacattttccatgttttg |
4802380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 104
Target Start/End: Original strand, 11689 - 11789
Alignment:
| Q |
3 |
attgaattatttgtttttattgaacacactcattcatgtgacatggtaatcatgtggatcgattgtagatagtttcgagcttctcacacattataagaat |
102 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||| | ||||||| || |||||||||| |
|
|
| T |
11689 |
attgaattatttgttgttattgaacatgctcattcatgtgacatgatagtcatgtgga-agattgtagatagtttctaacttctcagaccttataagaat |
11787 |
T |
|
| Q |
103 |
aa |
104 |
Q |
| |
|
|| |
|
|
| T |
11788 |
aa |
11789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University