View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_high_4 (Length: 435)
Name: NF20395_high_4
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 9 - 419
Target Start/End: Original strand, 47126506 - 47126920
Alignment:
| Q |
9 |
tataattctaacatgtatagtaatgtttgatccaaggtctttcgtttttatggagctatcattcttcagtaaattggtacacannnnnnn-atcctttgt |
107 |
Q |
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| T |
47126506 |
tataattctaacatgtatagtaatgtttgatccaaggtctttcgtttttatggagctatcattcttcagtaaattggtacacattttttttatcctttgt |
47126605 |
T |
|
| Q |
108 |
tagatacatatcttgaagcgcgtcatgacatggttataaggatccagttaaactttaccttatattgtgttaaaacatatctctactataaagtaaaatt |
207 |
Q |
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| T |
47126606 |
tagatacatatcttgaagcgtgtcatgacatagttataaggatccagttaaactttaccttatattgtgttaaaacatatctctactataaagtaaaatt |
47126705 |
T |
|
| Q |
208 |
cacgttactacaccaacgacattgaatgatttgagctcaaattctactaatatggtcgtataactttatcaaatgataagaaatattttagaaaaatata |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47126706 |
cacgttactacaccaacgacattgaatgatttgagctcaaattctactaatatggtcgtataactttatcaaatgataagaaatattttagaaaaattta |
47126805 |
T |
|
| Q |
308 |
atgacatt---tagtattctctaaaaatttctcgatgtgcatataaagaaaataaaatccttgtgtattgtgttcatttatcagtcgcaattggtagtaa |
404 |
Q |
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|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
47126806 |
atgacatttagtagtattctcttaaaatttatcgatgtgcatataaagaaaataaaatcattgtgtattgtgttcatttaccagtcgcaattggtagtaa |
47126905 |
T |
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| Q |
405 |
ccaagaagcacaaaa |
419 |
Q |
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| T |
47126906 |
ccaagaagcacaaaa |
47126920 |
T |
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