View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20395_high_7 (Length: 392)

Name: NF20395_high_7
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20395_high_7
NF20395_high_7
[»] chr2 (9 HSPs)
chr2 (8-198)||(32950377-32950567)
chr2 (229-375)||(32950588-32950733)
chr2 (229-274)||(4878400-4878445)
chr2 (229-274)||(11931275-11931320)
chr2 (229-274)||(15920277-15920322)
chr2 (229-274)||(18089064-18089109)
chr2 (229-274)||(18141147-18141192)
chr2 (230-274)||(11550332-11550376)
chr2 (230-274)||(37884057-37884101)
[»] chr4 (7 HSPs)
chr4 (229-274)||(46716560-46716605)
chr4 (229-274)||(9549835-9549880)
chr4 (229-274)||(24100557-24100602)
chr4 (229-274)||(44374941-44374986)
chr4 (229-274)||(56236483-56236528)
chr4 (229-269)||(38943814-38943854)
chr4 (237-269)||(52555422-52555454)
[»] chr5 (5 HSPs)
chr5 (230-274)||(34866836-34866880)
chr5 (235-269)||(28423707-28423741)
chr5 (229-274)||(5378705-5378750)
chr5 (229-274)||(40775164-40775209)
chr5 (229-269)||(17218126-17218166)
[»] chr6 (2 HSPs)
chr6 (230-269)||(548543-548582)
chr6 (229-269)||(20845416-20845456)
[»] scaffold0012 (1 HSPs)
scaffold0012 (235-269)||(245038-245072)
[»] chr3 (7 HSPs)
chr3 (235-269)||(27189119-27189153)
chr3 (229-274)||(2598480-2598525)
chr3 (229-274)||(4020001-4020046)
chr3 (229-274)||(36540363-36540408)
chr3 (229-274)||(36623923-36623968)
chr3 (229-274)||(48652109-48652154)
chr3 (229-269)||(10977646-10977686)
[»] chr8 (3 HSPs)
chr8 (229-274)||(5457474-5457519)
chr8 (229-274)||(31712740-31712785)
chr8 (229-269)||(28296780-28296820)
[»] chr7 (5 HSPs)
chr7 (229-274)||(26017324-26017369)
chr7 (229-274)||(34893510-34893555)
chr7 (229-274)||(37890156-37890201)
chr7 (229-269)||(30992495-30992535)
chr7 (229-269)||(32312924-32312964)
[»] chr1 (7 HSPs)
chr1 (229-274)||(12967399-12967444)
chr1 (237-274)||(30853613-30853650)
chr1 (229-274)||(34659307-34659352)
chr1 (229-274)||(46589551-46589596)
chr1 (229-269)||(8893695-8893735)
chr1 (229-269)||(26771509-26771549)
chr1 (229-269)||(49652238-49652278)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 6e-87; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 32950377 - 32950567
Alignment:
Q  8 atgtcgaagaatataagcaaaatgactcataaacataatgttttaaagtttttagtaaaaatgtgtttctgactcaatgtaatgatttatgaactttcct 107  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  32950377 atgttgaacaatataagcaaaatgactcataaatataatgttttaaagttttttgtaaaaatgtgtttctgactcaatgtaatgatttctgaactttcct 32950476  T
Q  108 tatagtctgacataaatttcaatgtcaaactgttatttctgagctaacatctcattaacaataagagatgatcctaataaaataatgttaa 198  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32950477 tatagtttgacataaattacaatgtcaaactgttatttctgagctaacatctcattaacaataagagatgatcctaataaaataatgttaa 32950567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 32950588 - 32950733
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgtnnnnnnnnngatttattgcactttttctaacttcgatattagcaaaaccatcac 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||| ||||||    
T  32950588 cgatggactatatcaatttgaatcaatgaatatcatttattgttgtaaaaaaaa-gatttattgcactttttctaacttcgatattagcaaaatcatcac 32950686  T
Q  329 atgtatctggacaaatttgctccaaatacaatttttatgtaatattt 375  Q
    |||||| ||||||||||||||  ||||||| ||||||||| ||||||    
T  32950687 atgtatttggacaaatttgctataaatacactttttatgtcatattt 32950733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 4878445 - 4878400
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  4878445 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 4878400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 11931275 - 11931320
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  11931275 cgatgtactttatcaatttgaatgaatgaatatcatttatttttgt 11931320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 15920277 - 15920322
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  15920277 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 15920322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 18089109 - 18089064
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||||||||||||||||| |||||||||| |||||| ||||    
T  18089109 cgatgtactatatcaatttgaatgaatgaatatcgtttatttttgt 18089064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 18141192 - 18141147
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  18141192 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 18141147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 11550376 - 11550332
Alignment:
Q  230 gatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    |||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  11550376 gatgtactctatcaatttgaatgaatgaatatcatttatttttgt 11550332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 37884057 - 37884101
Alignment:
Q  230 gatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||||    
T  37884057 gatgtactatatcaatttgaatgaatgaatatcgtttattattgt 37884101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 46716605 - 46716560
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  46716605 cgatgtactatatcaatttgaatgaatgaatatcatttatttttgt 46716560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 9549835 - 9549880
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||||||| ||||||||| ||||||||||||||||| ||||    
T  9549835 cgatgtactatattaatttgaatgaatgaatatcatttatttttgt 9549880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 24100557 - 24100602
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  24100557 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 24100602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 44374986 - 44374941
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  44374986 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 44374941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 56236528 - 56236483
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  56236528 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 56236483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 38943854 - 38943814
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  38943854 cgatgtactctatcaatttgaatgaatgaatatcatttatt 38943814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 52555454 - 52555422
Alignment:
Q  237 tatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||||||||||||| |||||||||||||||||    
T  52555454 tatatcaatttgaatgaatgaatatcatttatt 52555422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 34866836 - 34866880
Alignment:
Q  230 gatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||||    
T  34866836 gatgcactatatcaatttgaatgaatgaatatcatttatttttgt 34866880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 28423741 - 28423707
Alignment:
Q  235 actatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||||||||||||||| |||||||||||||||||    
T  28423741 actatatcaatttgaatgaatgaatatcatttatt 28423707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 5378705 - 5378750
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  5378705 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 5378750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 40775164 - 40775209
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  40775164 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 40775209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 17218126 - 17218166
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  17218126 cgatgtactctatcaatttgaatgaatgaatatcatttatt 17218166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 548582 - 548543
Alignment:
Q  230 gatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  548582 gatgtactctatcaatttgaatcaatgaatatcatttatt 548543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 20845416 - 20845456
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||||||||||||||||| |||||||||| ||||||    
T  20845416 cgatgtactatatcaatttgaatgaatgaatatcttttatt 20845456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 245038 - 245072
Alignment:
Q  235 actatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||||||||||||||| |||||||||||||||||    
T  245038 actatatcaatttgaatgaatgaatatcatttatt 245072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 27189153 - 27189119
Alignment:
Q  235 actatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||||||||||||||| |||||||||||||||||    
T  27189153 actatatcaatttgaataaatgaatatcatttatt 27189119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 2598480 - 2598525
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||    
T  2598480 cgatgtactatatcaatttgaatacatgaatatcatttatttttgt 2598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 4020001 - 4020046
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  4020001 cgatgcactctatcaatttgaatgaatgaatatcatttatttttgt 4020046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 36540408 - 36540363
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||||||||||||||||| |||| |||||||||||| ||||    
T  36540408 cgatgtactatatcaatttgaatgaatggatatcatttatttttgt 36540363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 36623968 - 36623923
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  36623968 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 36623923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 48652154 - 48652109
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  48652154 cgatgtactttatcaatttgaatgaatgaatatcatttatttttgt 48652109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 10977646 - 10977686
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||||||||||||||||| |||||||||| ||||||    
T  10977646 cgatgtactatatcaatttgaatgaatgaatatcttttatt 10977686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 5457474 - 5457519
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  5457474 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 5457519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 31712785 - 31712740
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  31712785 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 31712740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 28296820 - 28296780
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  28296820 cgatgtactctatcaatttgaatgaatgaatatcatttatt 28296780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 26017369 - 26017324
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  26017369 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 26017324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 34893510 - 34893555
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  34893510 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 34893555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 37890201 - 37890156
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||||    
T  37890201 cgatgtactatatcaatttgaatgaatgaatatcattgatttttgt 37890156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 30992535 - 30992495
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  30992535 cgatgtactctatcaatttgaatgaatgaatatcatttatt 30992495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 32312924 - 32312964
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  32312924 cgatgtactctatcaatttgaatgaatgaatatcatttatt 32312964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 12967444 - 12967399
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  12967444 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 12967399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 30853650 - 30853613
Alignment:
Q  237 tatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  30853650 tatatcaatttgaataaatgaatatcatttatttttgt 30853613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 34659352 - 34659307
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  34659352 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 34659307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 46589551 - 46589596
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttattgttgt 274  Q
    ||||| ||| ||||||||||||| ||||||||||||||||| ||||    
T  46589551 cgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 46589596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 8893695 - 8893735
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  8893695 cgatgtactctatcaatttgaatgaatgaatatcatttatt 8893735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 26771509 - 26771549
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  26771509 cgatgtactctatcaatttgaatgaatgaatatcatttatt 26771549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Original strand, 49652238 - 49652278
Alignment:
Q  229 cgatggactatatcaatttgaatcaatgaatatcatttatt 269  Q
    ||||| ||| ||||||||||||| |||||||||||||||||    
T  49652238 cgatgtactctatcaatttgaatgaatgaatatcatttatt 49652278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University