View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20395_low_1 (Length: 634)

Name: NF20395_low_1
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20395_low_1
NF20395_low_1
[»] chr7 (6 HSPs)
chr7 (256-629)||(26618446-26618817)
chr7 (256-545)||(26620418-26620697)
chr7 (256-501)||(26607880-26608122)
chr7 (557-618)||(26620735-26620796)
chr7 (257-499)||(8248594-8248820)
chr7 (557-629)||(26608204-26608275)
[»] chr1 (5 HSPs)
chr1 (137-535)||(39367326-39367720)
chr1 (272-535)||(18308714-18308975)
chr1 (18-135)||(39366504-39366621)
chr1 (428-535)||(17113447-17113554)
chr1 (557-607)||(39367757-39367807)
[»] chr2 (5 HSPs)
chr2 (137-607)||(27150442-27150894)
chr2 (187-545)||(7702953-7703302)
chr2 (256-535)||(24479673-24479950)
chr2 (424-499)||(31481317-31481392)
chr2 (323-407)||(40016936-40017022)
[»] chr4 (5 HSPs)
chr4 (256-545)||(37744388-37744676)
chr4 (275-607)||(37750312-37750646)
chr4 (187-558)||(24558278-24558639)
chr4 (255-292)||(21318401-21318438)
chr4 (558-607)||(37744702-37744751)
[»] chr8 (3 HSPs)
chr8 (256-494)||(6223888-6224124)
chr8 (344-545)||(17633856-17634056)
chr8 (488-607)||(14998069-14998189)
[»] chr6 (3 HSPs)
chr6 (256-545)||(24631556-24631841)
chr6 (259-499)||(1943129-1943367)
chr6 (424-501)||(30129181-30129257)
[»] chr5 (1 HSPs)
chr5 (256-413)||(31571518-31571676)
[»] chr3 (1 HSPs)
chr3 (256-471)||(25338450-25338663)
[»] scaffold0002 (2 HSPs)
scaffold0002 (275-477)||(445602-445801)
scaffold0002 (509-561)||(445854-445906)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 256 - 629
Target Start/End: Original strand, 26618446 - 26618817
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26618446 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 26618545  T
Q  356 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaa 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||    
T  26618546 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgtttttgct--ctcacattccttctaaatacttgcagctagaa 26618643  T
Q  456 gacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggttatttatta 555  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  26618644 gacttttgttgtttcaagtgaaactatgaaagatggtgttgcaagccaagaatatttttcttgcattagcttgcttagattccctcatggttatttatta 26618743  T
Q  556 ttttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgatattcttgga 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  26618744 ttttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgatttgcttgga 26618817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 256 - 545
Target Start/End: Original strand, 26620418 - 26620697
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttca-tctctagcagaggtaagttatgctctatctttatatctcaat 354  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||| ||| |||||||| ||||||| ||||||||||  |||||    
T  26620418 ttcctctgttcataaagtagcaacacttaaatcaataggattttgttgcttgtttcaatctttagtagaggtaaattatgctttatctttataaatcaat 26620517  T
Q  355 tttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctaga 454  Q
    |||||         ||||||| ||||| |||||||||||||||||||||||| ||||||          |||||||||||||||||||||||||||||||    
T  26620518 ttttt---------tggatttggttcaatcatttatacctcaaatttactttgattttgtttttgct--ctcacattccttctaaatacttgcagctaga 26620606  T
Q  455 agacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 545  Q
    |||||||||||||||||| ||||  ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| || ||||||    
T  26620607 agacttttgttgtttcaaatgaagctatgaaagatgatgttgcaagccaagaagatttttgttgcattagctttcttagatcccctcatgg 26620697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 256 - 501
Target Start/End: Original strand, 26607880 - 26608122
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 355  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| || |||||||||||||||||||| ||    
T  26607880 ttcctctgttctggaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtagaggtaaattctgctctatctttatatctcattt 26607979  T
Q  356 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaa 455  Q
    ||||| ||| |||||||||| ||||| |||||||||| | ||||||||||||||||||          ||||||||||||||| ||||||||||||||||    
T  26607980 ttttattgattgttggatttggttcaatcatttatacgt-aaatttacttttattttg--tttttgctctcacattccttctacatacttgcagctagaa 26608076  T
Q  456 gacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagc 501  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||    
T  26608077 gacttttgttgtttcaaatgaagctatgaaagatggtgttgcaagc 26608122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 557 - 618
Target Start/End: Original strand, 26620735 - 26620796
Alignment:
Q  557 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttg 618  Q
    |||||||||||||||||||||||| |||||||| |  |||||||||||||||||||||||||    
T  26620735 tttttggtggaaaaagtgattattactaggtttagttaggatatcttatttgtagtattttg 26620796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 257 - 499
Target Start/End: Complemental strand, 8248820 - 8248594
Alignment:
Q  257 tcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattt 356  Q
    ||||||||||| ||||||||||| ||||||  ||||||||||||||  ||||||      ||  | |||||| || ||||| || ||||||||| |||||    
T  8248820 tcctctgttcacaaagtagcaacccttaaagtaataggattttgtttcttgcttt-----taataaaggtaaattctgctccatttttatatcttaattt 8248726  T
Q  357 ttt--agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctaga 454  Q
    |||  || || | ||||||||  |||| ||| ||||||||||||||||||||||||             |||||||| ||||||||||||||||||||||    
T  8248725 tttttagcgattattggatttgtttcaatcacttatacctcaaatttacttttatt-------------ctcacattacttctaaatacttgcagctaga 8248639  T
Q  455 agacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaa 499  Q
    |||  ||||||| | ||||||||  ||| ||||||| | ||||||    
T  8248638 agatatttgttgctccaagtgaagctattaaagatgttattgcaa 8248594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 557 - 629
Target Start/End: Original strand, 26608204 - 26608275
Alignment:
Q  557 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttatttgtagtattttgatattcttgga 629  Q
    ||||||||| ||||| |||||||| |||||||| |  ||||||||||||||||||||||||||| | ||||||    
T  26608204 tttttggtgaaaaaa-tgattattactaggtttagttaggatatcttatttgtagtattttgatttgcttgga 26608275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 137 - 535
Target Start/End: Original strand, 39367326 - 39367720
Alignment:
Q  137 atgttatgttgtgttgtaattgtgaatctatatgannnnnnnctttctttcttaggatatggtaggattgattttattctcagggaatataacaatataa 236  Q
    |||||||||||||| ||||||||||||||||||||        ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39367326 atgttatgttgtgtggtaattgtgaatctatatgatttttt--ttttttgcttaggatatggtaggattgattttattctcagggaatataacaatataa 39367423  T
Q  237 gaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgct 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| | ||| || || ||||    
T  39367424 gaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaatcaataggattttgttggctgcttcatctttagtaaaggaaaattctgct 39367523  T
Q  337 ctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttc 436  Q
    | ||| |||||||||| | ||| ||||| |||||||||| || || | |||||||||||||||||||||||||||||          |||||||||||||    
T  39367524 ccatc-ttatatctcattatttcagtgattgttggatttggtacaattatttatacctcaaatttacttttattttg--tttttgttctcacattccttc 39367620  T
Q  437 taaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagc-ttgcttagat 535  Q
    |||||||||| ||||||||||||||||||||||| |  |||  ||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||    
T  39367621 taaatacttgtagctagaagacttttgttgtttccaaggaagctatgaaaaatggtgttgcaagccaagcagatttttgttgcattagctttgcttagat 39367720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 272 - 535
Target Start/End: Complemental strand, 18308975 - 18308714
Alignment:
Q  272 gtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttgg 371  Q
    |||| |||||||  ||||||| ||||||| || ||||||||||||||| | |||||| || ||||| |||||||||||||||||| ||||||| ||||||    
T  18308975 gtagaaacacttttatcaatatgattttgctgcttgcttcatctctagtaaaggtaaattctgctccatctttatatctcaatttcttagtgattgttgg 18308876  T
Q  372 atttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttca 471  Q
    |||| ||||| | |||||||||||||||||| |||||||| |          ||||||||| |||||||||||||||||||||||||||||||||| ||     
T  18308875 atttggttcaataatttatacctcaaatttatttttatttagtttttgat--ctcacattcattctaaatacttgcagctagaagacttttgttgtatcc 18308778  T
Q  472 agtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagat 535  Q
    || |||  |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  18308777 agagaagctatgaaggatggtgttgcaagccaagaagatttctgttgcattagcttgcttagat 18308714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 39366504 - 39366621
Alignment:
Q  18 gttctttaccacgaccgataatcaagctaattagcacgaagctttcatggacaatctaaatgaagacaagaaagcaaaggaaataaaaatatgcataaat 117  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39366504 gttctttaccacgaccaataatcaagctgattaacacgaagctttcatggacaatctaaatgaagacaagaaagcaaaggaaataaaaatatgcataaat 39366603  T
Q  118 tcccaagtctaaagagag 135  Q
    ||||||||||||||||||    
T  39366604 tcccaagtctaaagagag 39366621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 428 - 535
Target Start/End: Complemental strand, 17113554 - 17113447
Alignment:
Q  428 cattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagctt 527  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||| ||||  |||||| |||| ||||||||||||| || |||||||||||||||||||    
T  17113554 cattccttttaaatacttgcagctagaagatttttgttgattcaaatgaagctatgaatgatgttgttgcaagccaataagatttttgttgcattagctt 17113455  T
Q  528 gcttagat 535  Q
    ||||||||    
T  17113454 gcttagat 17113447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 557 - 607
Target Start/End: Original strand, 39367757 - 39367807
Alignment:
Q  557 tttttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 607  Q
    ||||||||||||||||||||| || |||||||| |  ||||||||||||||    
T  39367757 tttttggtggaaaaagtgattgttactaggtttagttaggatatcttattt 39367807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 2e-81; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 137 - 607
Target Start/End: Original strand, 27150442 - 27150894
Alignment:
Q  137 atgttatgttgtgttgtaattgtgaatctatatgannnnnnnctttctttcttaggatatggtaggattgattttattctcagggaatataacaatataa 236  Q
    ||||| |||||||| ||||||||||||||||||||        |||  | |||||||||||||||||||| ||||| ||||  ||||||||||||| | |    
T  27150442 atgttctgttgtgtggtaattgtgaatctatatgatgtt----ttttgtgcttaggatatggtaggattggttttactctcttggaatataacaat-tca 27150536  T
Q  237 gaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgct 336  Q
    ||||| |||||||||    |||||||||||||||| || |||||||||||||||||||||||||||| ||| ||||||| ||| | |||||| || ||||    
T  27150537 gaggaagtccttcctccg-ttcctctgttcagaaattaacaacacttaaatcaataggattttgttgcttggttcatctttagtaaaggtaaattttgct 27150635  T
Q  337 ctatctttatatctcaattttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttc 436  Q
    | |||||||||||||||||||||||||| |||||||||| ||| | | |||||||||||||||||||||||||||||          |||||||| |||     
T  27150636 ccatctttatatctcaattttttagtgattgttggatttggttaaattatttatacctcaaatttacttttattttg--tttttgttctcacatttcttt 27150733  T
Q  437 taaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagatt 536  Q
    |||||||||||||||||||||||||||||||||| || |||  |||||||           |||||||||| || |||||||||||| |||||||||||     
T  27150734 taaatacttgcagctagaagacttttgttgtttccagagaagctatgaaa-----------aagccaagaagatatttgttgcattatcttgcttagatc 27150822  T
Q  537 ccttcatggttatttattatttt-ttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 607  Q
    || |||||| || || ||||||| ||||||||||||||||||||| ||||||||    ||||||||||||||    
T  27150823 ccctcatggctaatttttattttgttggtggaaaaagtgattattactaggtttatttaggatatcttattt 27150894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 187 - 545
Target Start/End: Complemental strand, 7703302 - 7702953
Alignment:
Q  187 cttaggatatggtaggattgattttattctcagggaatataacaatataagaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaa 286  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| ||||||||| |  ||| ||| |||||||||||| |||| |||||    
T  7703302 cttaggatatggtaggattggttttactctcaggaaatataacaatatcagaggaagtccttcctctc-ttcttctcttcagaaagtagaaacatttaaa 7703204  T
Q  287 tcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttggatttagttcattcat 386  Q
    |||||||||||||| |   |||||||||| ||| | |||||| || ||||| || |||||||||||||||| |||||| |||||||||| ||||| | ||    
T  7703203 tcaataggattttgct---tgcttcatctttagtaaaggtaaattctgctccatttttatatctcaattttctagtgattgttggatttggttcaattat 7703107  T
Q  387 ttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaa 486  Q
    |||||||||||||||||||||||||||          ||||| ||||||||||||||||||||||||||||||||||||||||| || |||  |||||||    
T  7703106 ttatacctcaaatttacttttattttg--tttttgttctcacgttccttctaaatacttgcagctagaagacttttgttgtttccagagaagctatgaaa 7703009  T
Q  487 gatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 545  Q
    |||||| |||||| | |||   |||||||||||||||||||| ||||||||| ||||||    
T  7703008 gatggttttgcaaacaaag---atttttgttgcattagcttggttagattccctcatgg 7702953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 256 - 535
Target Start/End: Complemental strand, 24479950 - 24479673
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 355  Q
    ||||||| |||||||||||||||||  |||||||||| ||||  |||| ||||||||||| |||   || ||| || | ||  |||||||||||||||||    
T  24479950 ttcctctattcagaaagtagcaacatataaatcaatatgattaagttgcttgcttcatctttagttaagctaaattctactacatctttatatctcaatt 24479851  T
Q  356 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaa 455  Q
    ||||||||| | ||||||||  |||| |||||||||||||||||||||||||| |||            ||| ||||| |||||||||||| ||||||||    
T  24479850 ttttagtgattattggatttgattcaatcatttatacctcaaatttacttttactttatttttgtta--tcatattccatctaaatacttgtagctagaa 24479753  T
Q  456 gacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagat 535  Q
    ||||||||||| ||||||||||  ||| |||||||||||||||| | ||||| || ||||||||||||||||||||||||    
T  24479752 gacttttgttgcttcaagtgaagctataaaagatggtgttgcaatctaagaagatctttgttgcattagcttgcttagat 24479673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 424 - 499
Target Start/End: Complemental strand, 31481392 - 31481317
Alignment:
Q  424 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaa 499  Q
    ||||||||||||||||||||||| || ||||||| |||| ||| || |||||||  ||  ||||||||||||||||    
T  31481392 ctcacattccttctaaatacttgtagttagaagaatttttttgcttaaagtgaagctaataaagatggtgttgcaa 31481317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 40017022 - 40016936
Alignment:
Q  323 aggtaagttatgctctatctttatatctcaatttttt--agtgaatgttggatttagttcattcatttatacctcaaatttactttt 407  Q
    |||||| || || |||||||||| |||||||||||||  ||| | | ||| |||| ||||| ||||||||||||| |||||||||||    
T  40017022 aggtaaattttgttctatctttacatctcaattttttttagttattattgaatttggttcaatcatttatacctctaatttactttt 40016936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 256 - 545
Target Start/End: Original strand, 37744388 - 37744676
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaa-t 354  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||| | |||||| || ||| | |||||| |||||||| |    
T  37744388 ttcctctcttcagaaagtagcaacacttaaatcaattggattttgtttcttgcttcatctttagtaaaggtaaattctgcaccatctttgtatctcaatt 37744487  T
Q  355 tttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctaga 454  Q
    |||||||||| |||||||||  ||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||    
T  37744488 tttttagtgattgttggattgggttcaatcatttatacctcaaatttacttttattttg--tttttgttctcacattccttctaaatacttgcacctaga 37744585  T
Q  455 agacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 545  Q
    ||||||||||||||||||| |||  |||||||||||||||||| | |||| || ||||||||||||||||||||||||||| || ||||||    
T  37744586 agacttttgttgtttcaagagaagctatgaaagatggtgttgcgatccaaaaagatttttgttgcattagcttgcttagatcccctcatgg 37744676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 275 - 607
Target Start/End: Original strand, 37750312 - 37750646
Alignment:
Q  275 gcaacacttaaatcaataggat----tttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttg 370  Q
    ||||||||||||| ||||||||    || |||  ||||||||||| ||  | |||||| || ||||| |||||||||||||||||||||||||| |||||    
T  37750312 gcaacacttaaattaataggatcgatttagttacttgcttcatctttactaaaggtaaattctgctccatctttatatctcaattttttagtgattgttg 37750411  T
Q  371 gatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttc 470  Q
    |||||  |||| | |||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37750412 gatttgattcaattatttatacctcaaatttacttttattttgtttttgtt--ctcacattccttctaaatacttgcaactagaagacttttgttgtttc 37750509  T
Q  471 aagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggttatttattattttttggtggaaaa 570  Q
     || |||  |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||  || |||||| || |  || ||||||| |||||||    
T  37750510 cagagaagctatgaaagatggtgttacaagccaagaagatttttgttgcattagcttgcttagaccccatcatggctaatgttttttttttgttggaaaa 37750609  T
Q  571 agtgattattgctaggtttggcgaggatatcttattt 607  Q
    | |||||||| |||||||| |  ||||||||||||||    
T  37750610 aatgattattactaggtttagttaggatatcttattt 37750646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 187 - 558
Target Start/End: Original strand, 24558278 - 24558639
Alignment:
Q  187 cttaggatatggtaggattgattttattctcagggaatataacaatataagaggatgtccttcctttaattcctctgttcagaaagtagcaacacttaaa 286  Q
    ||||||||||||||||||||  | || | ||||||||||||||||||| |||||| |||         || ||||| |||||||||||||||||||||||    
T  24558278 cttaggatatggtaggattggctatactttcagggaatataacaatatcagaggaagtc---------atgcctctattcagaaagtagcaacacttaaa 24558368  T
Q  287 tcaataggattttgttgtttgcttcatctctagcagaggtaagttat--gctctatctttatatctcaattttttagtgaatgttggatttagttcattc 384  Q
    | ||||||||||||||| |||||||| || ||| | |||||| ||||  |||| |||||||||||||||| |||||| ||   |||||||| ||||| ||    
T  24558369 ttaataggattttgttgcttgcttcacctttagtaaaggtaaattatatgctccatctttatatctcaatgttttagagatcattggatttggttcaatc 24558468  T
Q  385 atttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatga 484  Q
    |||||||||||||||||||||||||||||          |||||||||||||| ||||||| |||||| |||| |||||||| |||||||||  | ||||    
T  24558469 atttatacctcaaatttacttttattttg--tttttgtactcacattccttct-aatacttacagctaaaagatttttgttgcttcaagtgagca-atga 24558564  T
Q  485 aagatggtgttgcaagccaagaatatttttgttgcattagc-ttgcttagattccttcatggttatttattattt 558  Q
    |||||| ||||||||| |||||| ||| ||||| || |||| ||||||||||||| |||||| || || ||||||    
T  24558565 aagatgatgttgcaagtcaagaagattcttgtttcaatagctttgcttagattccctcatggctagtttttattt 24558639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 21318438 - 21318401
Alignment:
Q  255 attcctctgttcagaaagtagcaacacttaaatcaata 292  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  21318438 attcctctgttcagaaaatagcaacaattaaatcaata 21318401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 37744702 - 37744751
Alignment:
Q  558 ttttggtggaaaaagtgattattgctaggtttggcgaggatatcttattt 607  Q
    ||||||||||||||||||||||| |||||||| |   |||||||||||||    
T  37744702 ttttggtggaaaaagtgattattactaggtttagttgggatatcttattt 37744751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 256 - 494
Target Start/End: Complemental strand, 6224124 - 6223888
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 355  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| ||| | |||||| || ||||| |||||||||||||||||    
T  6224124 ttcctctgttcaaaaagtagcaacacttaaatcaatatgattttgttgcttgcttcatctttagtaaaggtaaattctgctccatctttatatctcaatt 6224025  T
Q  356 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaa 455  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||          | || |||||||||||||||||||||||||||    
T  6224024 ttttagtgattgttggatttggttcaatcatttatacctcaaatttacttttattttg--tttttgttcccatattccttctaaatacttgcagctagaa 6223927  T
Q  456 gacttttgttgtttcaagtgaaaatatgaaagatggtgt 494  Q
    ||||||||||||||| || |||  |||||||||||||||    
T  6223926 gacttttgttgtttcgagagaagctatgaaagatggtgt 6223888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 344 - 545
Target Start/End: Original strand, 17633856 - 17634056
Alignment:
Q  344 tatatctcaatttttt-agtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaata 442  Q
    |||||||||||||||| ||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||          |||||||||||||||||||    
T  17633856 tatatctcaatttttttagtgattattggatttggttcaatcatttatacctaaaatttacttttactttgtttttgtt--ctcacattccttctaaata 17633953  T
Q  443 cttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttca 542  Q
    ||||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||| ||||||| |||  |||||||||||||| || |||    
T  17633954 cttgcagctagaagatttttgttgcttcaagtgaagttatgaaagatggtgttgcaagccaagaagatttttgctgcggtagcttgcttagatcccctca 17634053  T
Q  543 tgg 545  Q
    |||    
T  17634054 tgg 17634056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 488 - 607
Target Start/End: Complemental strand, 14998189 - 14998069
Alignment:
Q  488 atggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatggtta--tttattattttttggtggaaaaagtgattattgctag 585  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||   |||||||| ||  |||||| || |||  ||||||||||||||||| ||||    
T  14998189 atggtgttgcaaaccaagaagatttttgttgcattagcttgcttagaagacttcatggctaattttatt-ttattttttggaaaaagtgattattactag 14998091  T
Q  586 gtttggcgaggatatcttattt 607  Q
    |||| |  ||||||||||||||    
T  14998090 gtttagttaggatatcttattt 14998069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 256 - 545
Target Start/End: Original strand, 24631556 - 24631841
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 355  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||||  ||||||||||| ||| | |||||| || ||||| ||||||||||||||  |    
T  24631556 ttcctcttttcagaaagttgcaacacttgaatcaataggattttgttccttgcttcatctttagtaaaggtaaattctgctccatctttatatctcagat 24631655  T
Q  356 ttttagtga--atgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctag 453  Q
    |||||||||   |||||||||| ||||| |||||||||||||||||||||||||| ||||          |||||||||||  |||||||||||||||||    
T  24631656 ttttagtgattgtgttggatttggttcaatcatttatacctcaaatttacttttaatttg----tttgtcctcacattcct--taaatacttgcagctag 24631749  T
Q  454 aagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagccaagaatatttttgttgcattagcttgcttagattccttcatgg 545  Q
    |||||||||||||  |||||||||  || |||| ||||||||||||| |||||| ||||||||||||||||||||||||||| || ||||||    
T  24631750 aagacttttgttgcctcaagtgaagctacgaaacatggtgttgcaagtcaagaagatttttgttgcattagcttgcttagatcccctcatgg 24631841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 259 - 499
Target Start/End: Complemental strand, 1943367 - 1943129
Alignment:
Q  259 ctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttt 358  Q
    ||||||| ||||||||| |||||||||||||||||  |||||||| ||| ||      ||| | |||||| || ||||| ||||||||||||||||||||    
T  1943367 ctctgtttagaaagtagtaacacttaaatcaatagacttttgttgcttgtttt-----tagaaaaggtaaattctgctccatctttatatctcaattttt 1943273  T
Q  359 ta--gtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaag 456  Q
    |   |||| | |  ||||| ||||| ||| |||||||||||||||||||||||||||          |||||||||||||||||||||||| ||||||||    
T  1943272 ttttgtgattatcagatttggttcaatcacttatacctcaaatttacttttattttg--tttgtgttctcacattccttctaaatacttgcggctagaag 1943175  T
Q  457 acttttgttgtttcaagtgaaaatatga---aagatggtgttgcaa 499  Q
    |  ||||||| | ||||||||| ||| |   |||||||||||||||    
T  1943174 atatttgttgctccaagtgaaactattaattaagatggtgttgcaa 1943129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 424 - 501
Target Start/End: Original strand, 30129181 - 30129257
Alignment:
Q  424 ctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagtgaaaatatgaaagatggtgttgcaagc 501  Q
    |||||||||||||||||||||||||||||||||| |||||||  || | |||||  ||| ||||||||||||||||||    
T  30129181 ctcacattccttctaaatacttgcagctagaaga-ttttgttactttaggtgaagctattaaagatggtgttgcaagc 30129257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 256 - 413
Target Start/End: Complemental strand, 31571676 - 31571518
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 355  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| | ||||||||| | ||  |||||||||||||||||    
T  31571676 ttcctctgttcagaaagtggcaacacttaaatcaataggattttgttgtttgattcatctttagtaaaggtaagttcttctgcatctttatatctcaatt 31571577  T
Q  356 ttttagtgaatgttggatttagttcattcatttata-cctcaaatttacttttattttg 413  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  31571576 ttttagtgattgttggatttagttcaatcatttatacccccaaatttacttttattttg 31571518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 256 - 471
Target Start/End: Original strand, 25338450 - 25338663
Alignment:
Q  256 ttcctctgttcagaaagtagcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaatt 355  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||| || | ||| ||||||||||||||| |    
T  25338450 ttcctctgtttagaaagtagcaacacttaaatcaataggattttgttgcttgcttcatctttagtaaaggtaaattctactccatctttatatctcaaat 25338549  T
Q  356 ttttagtgaatgttggatttagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaa 455  Q
    |||| |||| | |||||||| ||||| ||||||||||||  |||||||||||| ||||          |||||||| ||| |||||||||||||||||||    
T  25338550 tttttgtgattattggatttggttcaatcatttatacctacaatttacttttactttg--tttttgttctcacatttcttttaaatacttgcagctagaa 25338647  T
Q  456 gacttttgttgtttca 471  Q
    || |||||||| ||||    
T  25338648 gatttttgttgcttca 25338663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 275 - 477
Target Start/End: Original strand, 445602 - 445801
Alignment:
Q  275 gcaacacttaaatcaataggattttgttgtttgcttcatctctagcagaggtaagttatgctctatctttatatctcaattttttagtgaatgttggatt 374  Q
    |||||||||||||||||| ||||||||||||||||| |||| ||| | | |||| || ||||| || ||||||| |||||||||| || ||| |||||||    
T  445602 gcaacacttaaatcaataagattttgttgtttgctttatctttagtaaaagtaaattttgctccat-tttatatttcaattttttggtaaatattggatt 445700  T
Q  375 tagttcattcatttatacctcaaatttacttttattttgnnnnnnnnnnctcacattccttctaaatacttgcagctagaagacttttgttgtttcaagt 474  Q
    | |||||   |||||||||||||||||||||||||||||          || ||||||||||||||||||||||||||||||| | |||||| |||||||    
T  445701 tggttcaaatatttatacctcaaatttacttttattttg--tttttgtgcttacattccttctaaatacttgcagctagaagattgttgttgcttcaagt 445798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 561
Target Start/End: Original strand, 445854 - 445906
Alignment:
Q  509 atttttgttgcattagcttgcttagattccttcatggttatttattatttttt 561  Q
    |||||| |||||||||||||||||||| || |||||| ||||| || ||||||    
T  445854 attttttttgcattagcttgcttagatcccatcatggctatttcttttttttt 445906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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