View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20395_low_10 (Length: 383)

Name: NF20395_low_10
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20395_low_10
NF20395_low_10
[»] chr3 (7 HSPs)
chr3 (11-365)||(32350001-32350355)
chr3 (181-215)||(20208214-20208248)
chr3 (155-201)||(21862747-21862793)
chr3 (161-201)||(40991661-40991701)
chr3 (165-201)||(46140637-46140673)
chr3 (165-201)||(49042167-49042203)
chr3 (165-201)||(53519810-53519846)
[»] chr6 (4 HSPs)
chr6 (161-200)||(6906839-6906878)
chr6 (161-211)||(3206471-3206521)
chr6 (165-211)||(9706990-9707036)
chr6 (161-201)||(608391-608431)
[»] chr8 (4 HSPs)
chr8 (165-211)||(44529445-44529491)
chr8 (155-211)||(12491144-12491200)
chr8 (161-201)||(26639256-26639296)
chr8 (161-201)||(35914613-35914653)
[»] chr7 (1 HSPs)
chr7 (165-211)||(46355872-46355918)
[»] chr5 (5 HSPs)
chr5 (165-211)||(4496604-4496650)
chr5 (165-211)||(10639522-10639568)
chr5 (161-201)||(16347392-16347432)
chr5 (161-201)||(18855837-18855877)
chr5 (165-201)||(36551376-36551412)
[»] chr4 (6 HSPs)
chr4 (165-211)||(436449-436495)
chr4 (161-201)||(4136755-4136795)
chr4 (161-201)||(18966835-18966875)
chr4 (161-201)||(35690501-35690541)
chr4 (161-201)||(44719373-44719413)
chr4 (165-201)||(51438675-51438711)
[»] chr2 (1 HSPs)
chr2 (165-211)||(38430104-38430150)
[»] scaffold0050 (1 HSPs)
scaffold0050 (165-201)||(58242-58278)
[»] chr1 (5 HSPs)
chr1 (161-201)||(4029352-4029392)
chr1 (161-201)||(26299298-26299338)
chr1 (161-201)||(28090706-28090746)
chr1 (161-201)||(28533697-28533737)
chr1 (135-210)||(46423201-46423277)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 32350001 - 32350355
Alignment:
Q  11 gaagaataacacaatattggaatcaaattgttgatgatagaagtacttttgatatgtaatgtttggattaacaacttaattaaggcttaaagcacaaatg 110  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32350001 gaagaataacacaatattggaatcaaattgttgatgacaaaagtacttttgatatgtaatgtttggattaacaacttaattaaggcttaaagcacagatg 32350100  T
Q  111 tttatcaaaaaagcgcttttgtacaagctatttctgtatacaacacaagtaagtcttatctcacaaagttgggtcggctacatggatcaaaagatgccat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  32350101 tttatcaaaaaagcgcttttgtacaagctatttctgtatacaacacaagtaagtcttatctcactaagttgggtcggctacatggatcaaacaatgccat 32350200  T
Q  211 aaagtcaaattgttgctaaaagttatttcattagctatcctagtgagcctactaaactaagttcttccaaacaatcccagatatctcatgacagtagata 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32350201 aaagtcaaattgttgctaaaagttatttcattagctatcctagtgagcctactaaactaagttcttccaaacaatcccagatatctcatgacagtagata 32350300  T
Q  311 agcttaaataagtcagttataacaagtaataaaccctatatcatttcacattact 365  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32350301 agcttaaataagtcagttctaacaagtaataaaccctatatcatttcacattact 32350355  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 20208248 - 20208214
Alignment:
Q  181 gggtcggctacatggatcaaaagatgccataaagt 215  Q
    ||||||||||||||||||||| |||||||||||||    
T  20208248 gggtcggctacatggatcaaatgatgccataaagt 20208214  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 21862747 - 21862793
Alignment:
Q  155 acaagtaagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    ||||| ||| |||||||||| |||| |||||||||||||||||||||    
T  21862747 acaagcaagccttatctcactaagtggggtcggctacatggatcaaa 21862793  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 40991701 - 40991661
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  40991701 aagtcttatctcactaagtggggtcagctacatggatcaaa 40991661  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 46140673 - 46140637
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  46140673 cttatctcacaaagtggggtcgactacatggatcaaa 46140637  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 49042203 - 49042167
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| |||| |||||||||||||||||||||    
T  49042203 cttatctcaccaagtggggtcggctacatggatcaaa 49042167  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 53519846 - 53519810
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| |||| |||||||||||||||||||||    
T  53519846 cttatctcactaagtggggtcggctacatggatcaaa 53519810  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 6906839 - 6906878
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaa 200  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  6906839 aagtcttatcgcactaagttgggtcggctacatggatcaa 6906878  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 3206471 - 3206521
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||||||| ||| |||| ||||||||||||||||||||| || ||||||    
T  3206471 aagtcttatcccactaagtggggtcggctacatggatcaaatgacgccata 3206521  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 9707036 - 9706990
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  9707036 cttatcccactaagtggggtcggctacatggatcaaatgatgccata 9706990  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 608431 - 608391
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  608431 aagtcttatcccactaagtagggtcggctacatggatcaaa 608391  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 44529491 - 44529445
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  44529491 cttatcccactaagtggggtcggctacatggatcaaatgatgccata 44529445  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 12491144 - 12491200
Alignment:
Q  155 acaagtaagtcttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||| |||| |||||| ||| |||| ||||||||||||||||||||| || ||||||    
T  12491144 acaactaagccttatcccactaagtggggtcggctacatggatcaaatgacgccata 12491200  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 26639296 - 26639256
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    ||||| |||||||| |||||||||||| |||||||||||||    
T  26639296 aagtcatatctcactaagttgggtcggatacatggatcaaa 26639256  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 35914613 - 35914653
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  35914613 aagtcttatctcactaagtggggtcagctacatggatcaaa 35914653  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 46355872 - 46355918
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||||||| |||| ||||||||||||||||||||| |||| ||||    
T  46355872 cttatctcactaagtggggtcggctacatggatcaaatgatggcata 46355918  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 4496650 - 4496604
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  4496650 cttatcccactaagtggggtcggctacatggatcaaatgatgccata 4496604  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 10639568 - 10639522
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||| |||||||| ||||||||||||||||||||| || ||||||    
T  10639568 cttatcccacaaagtggggtcggctacatggatcaaatgacgccata 10639522  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 16347392 - 16347432
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  16347392 aagtcttatcccactaagtagggtcggctacatggatcaaa 16347432  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 18855877 - 18855837
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  18855877 aagtcttatcccactaagtggggtcggctacatggatcaaa 18855837  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 36551412 - 36551376
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| |||| |||||||||||||||||||||    
T  36551412 cttatctcactaagtggggtcggctacatggatcaaa 36551376  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 436495 - 436449
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  436495 cttatcccactaagtggggtcggctacatggatcaaatgatgccata 436449  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 4136755 - 4136795
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||| ||||||||| |||| |||||||||||||||||||||    
T  4136755 aagttttatctcactaagtagggtcggctacatggatcaaa 4136795  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 18966875 - 18966835
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| |||||||| |||||||||||||| ||||||    
T  18966875 aagtcttatcgcacaaagtggggtcggctacatgaatcaaa 18966835  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 35690541 - 35690501
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  35690541 aagtcttatcccactaagtggggtcggctacatggatcaaa 35690501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 44719373 - 44719413
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  44719373 aagtcttatcccactaagtagggtcggctacatggatcaaa 44719413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 51438711 - 51438675
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||| |||||||||||||| |||||||||||||||    
T  51438711 cttatcccacaaagttgggtcagctacatggatcaaa 51438675  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 38430150 - 38430104
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaaagatgccata 211  Q
    |||||||||| |||| ||||||||||||||||||||| || ||||||    
T  38430150 cttatctcactaagtggggtcggctacatggatcaaatgacgccata 38430104  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 58242 - 58278
Alignment:
Q  165 cttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  58242 cttatcccactaagttgggtcggctacatggatcaaa 58278  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 4029392 - 4029352
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  4029392 aagtcttatcccactaagtggggtcggctacatggatcaaa 4029352  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 26299338 - 26299298
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  26299338 aagtcttatcccactaagtggggtcggctacatggatcaaa 26299298  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 28090706 - 28090746
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  28090706 aagtcttatcccactaagtggggtcggctacatggatcaaa 28090746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 28533737 - 28533697
Alignment:
Q  161 aagtcttatctcacaaagttgggtcggctacatggatcaaa 201  Q
    |||||||||| ||| |||| |||||||||||||||||||||    
T  28533737 aagtcttatcccactaagtggggtcggctacatggatcaaa 28533697  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 46423201 - 46423277
Alignment:
Q  135 aagctatttctgtatacaaca-caagtaagtcttatctcacaaagttgggtcggctacatggatcaaaagatgccat 210  Q
    ||||||||||| ||||||||| |||   || |||||| ||| |||| ||||||||||||||||||||| || |||||    
T  46423201 aagctatttctatatacaacaacaaccgagccttatcccactaagtggggtcggctacatggatcaaatgacgccat 46423277  T

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