View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20395_low_13 (Length: 349)

Name: NF20395_low_13
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20395_low_13
NF20395_low_13
[»] chr7 (20 HSPs)
chr7 (51-333)||(2000006-2000288)
chr7 (74-268)||(32450794-32450988)
chr7 (56-268)||(47085528-47085744)
chr7 (51-229)||(43664651-43664830)
chr7 (51-260)||(298495-298707)
chr7 (56-275)||(14999904-15000126)
chr7 (60-229)||(25472608-25472781)
chr7 (56-229)||(26827607-26827779)
chr7 (60-275)||(25970469-25970687)
chr7 (169-275)||(39857113-39857220)
chr7 (56-227)||(30825274-30825447)
chr7 (57-259)||(25191703-25191897)
chr7 (81-228)||(30139695-30139844)
chr7 (56-225)||(26826468-26826630)
chr7 (81-275)||(45202507-45202701)
chr7 (51-225)||(47158058-47158235)
chr7 (203-275)||(19544575-19544647)
chr7 (136-229)||(37371161-37371255)
chr7 (176-268)||(47238931-47239024)
chr7 (56-135)||(26169811-26169891)
[»] chr5 (16 HSPs)
chr5 (51-268)||(10900175-10900394)
chr5 (56-275)||(33387540-33387758)
chr5 (63-268)||(40979462-40979669)
chr5 (68-263)||(25256667-25256864)
chr5 (68-263)||(25320458-25320655)
chr5 (60-229)||(41742065-41742238)
chr5 (155-268)||(2526327-2526440)
chr5 (69-275)||(33082763-33082968)
chr5 (62-225)||(31905516-31905683)
chr5 (59-228)||(11018272-11018444)
chr5 (81-268)||(53534-53722)
chr5 (56-275)||(41039976-41040198)
chr5 (60-274)||(8958347-8958564)
chr5 (169-268)||(19375361-19375461)
chr5 (51-118)||(2526468-2526536)
chr5 (112-229)||(19356583-19356702)
[»] chr4 (20 HSPs)
chr4 (56-268)||(50523711-50523926)
chr4 (51-268)||(39732853-39733073)
chr4 (51-268)||(16202933-16203149)
chr4 (56-257)||(53663475-53663679)
chr4 (51-268)||(28911624-28911841)
chr4 (51-263)||(51677150-51677360)
chr4 (57-259)||(22606201-22606406)
chr4 (54-229)||(30418231-30418413)
chr4 (56-257)||(53403956-53404155)
chr4 (56-227)||(38767875-38768049)
chr4 (56-229)||(49723865-49724038)
chr4 (56-225)||(48407038-48407210)
chr4 (52-229)||(28963704-28963884)
chr4 (168-268)||(5937797-5937898)
chr4 (51-229)||(45105888-45106069)
chr4 (81-260)||(26457162-26457342)
chr4 (60-229)||(29385888-29386052)
chr4 (176-261)||(8503818-8503904)
chr4 (51-165)||(8510305-8510420)
chr4 (51-110)||(5937728-5937789)
[»] chr8 (16 HSPs)
chr8 (51-257)||(13015733-13015941)
chr8 (51-275)||(3590110-3590332)
chr8 (51-268)||(2025556-2025776)
chr8 (81-274)||(33165828-33166023)
chr8 (56-229)||(35802184-35802360)
chr8 (64-229)||(22936418-22936586)
chr8 (51-227)||(36821461-36821641)
chr8 (56-260)||(35164221-35164428)
chr8 (60-229)||(45276247-45276419)
chr8 (60-229)||(8416744-8416917)
chr8 (139-275)||(924137-924274)
chr8 (59-152)||(7637390-7637483)
chr8 (142-250)||(38023008-38023118)
chr8 (207-268)||(7636485-7636546)
chr8 (60-145)||(37683982-37684068)
chr8 (178-267)||(37684165-37684255)
[»] chr2 (14 HSPs)
chr2 (51-268)||(44002690-44002910)
chr2 (71-274)||(43695001-43695205)
chr2 (60-229)||(43342120-43342293)
chr2 (56-229)||(37640601-37640777)
chr2 (60-260)||(7473569-7473772)
chr2 (81-229)||(35458051-35458201)
chr2 (51-259)||(19860305-19860505)
chr2 (113-229)||(17480896-17481014)
chr2 (52-226)||(32497046-32497222)
chr2 (56-257)||(37996772-37996975)
chr2 (186-268)||(37551601-37551684)
chr2 (168-257)||(3739002-3739092)
chr2 (60-144)||(12015700-12015785)
chr2 (170-261)||(12015885-12015976)
[»] chr1 (26 HSPs)
chr1 (51-259)||(41512196-41512407)
chr1 (65-274)||(31100317-31100527)
chr1 (67-268)||(11829120-11829320)
chr1 (56-268)||(1762261-1762474)
chr1 (82-275)||(24075558-24075752)
chr1 (51-241)||(46033512-46033705)
chr1 (82-274)||(27416602-27416794)
chr1 (56-259)||(42137541-42137747)
chr1 (60-229)||(47655731-47655904)
chr1 (60-229)||(13509784-13509956)
chr1 (56-228)||(44740228-44740403)
chr1 (60-229)||(50030910-50031084)
chr1 (156-275)||(11051104-11051224)
chr1 (51-225)||(45179418-45179593)
chr1 (146-259)||(3850797-3850911)
chr1 (56-201)||(27067246-27067392)
chr1 (56-224)||(11050940-11051108)
chr1 (58-275)||(49430669-49430888)
chr1 (60-229)||(6706214-6706384)
chr1 (60-203)||(4485028-4485170)
chr1 (75-146)||(20473665-20473736)
chr1 (75-146)||(20557817-20557888)
chr1 (193-259)||(27065077-27065144)
chr1 (169-229)||(7385307-7385368)
chr1 (81-146)||(20364594-20364659)
chr1 (81-146)||(20546252-20546317)
[»] chr3 (20 HSPs)
chr3 (63-268)||(28883733-28883940)
chr3 (51-268)||(44328702-44328915)
chr3 (51-275)||(50392656-50392882)
chr3 (51-207)||(30810813-30810971)
chr3 (51-268)||(44610663-44610879)
chr3 (52-260)||(11263742-11263953)
chr3 (57-257)||(28182424-28182627)
chr3 (60-260)||(45150649-45150852)
chr3 (81-268)||(51407507-51407695)
chr3 (51-268)||(45488943-45489166)
chr3 (52-275)||(51229763-51229989)
chr3 (96-275)||(42074428-42074608)
chr3 (56-250)||(48181130-48181328)
chr3 (60-228)||(39251559-39251731)
chr3 (51-268)||(53687212-53687432)
chr3 (56-228)||(42274601-42274775)
chr3 (52-229)||(48254339-48254520)
chr3 (102-257)||(33025686-33025842)
chr3 (169-268)||(40237342-40237442)
chr3 (205-268)||(30809852-30809915)
[»] chr6 (8 HSPs)
chr6 (56-268)||(30134190-30134400)
chr6 (66-268)||(20838345-20838550)
chr6 (155-268)||(4146855-4146968)
chr6 (51-192)||(27825119-27825262)
chr6 (169-229)||(10683249-10683310)
chr6 (51-118)||(4146994-4147062)
chr6 (216-268)||(27825067-27825119)
chr6 (85-134)||(10683333-10683382)
[»] scaffold0097 (1 HSPs)
scaffold0097 (56-229)||(32902-33078)
[»] scaffold0184 (1 HSPs)
scaffold0184 (126-275)||(9606-9756)
[»] scaffold0006 (1 HSPs)
scaffold0006 (60-207)||(91641-91790)
[»] scaffold0068 (1 HSPs)
scaffold0068 (82-229)||(37777-37926)
[»] scaffold0808 (1 HSPs)
scaffold0808 (60-225)||(4176-4342)
[»] scaffold0069 (1 HSPs)
scaffold0069 (56-207)||(16920-17069)
[»] scaffold0702 (1 HSPs)
scaffold0702 (174-275)||(4524-4626)
[»] scaffold0662 (1 HSPs)
scaffold0662 (174-275)||(3472-3574)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 51 - 333
Target Start/End: Original strand, 2000006 - 2000288
Alignment:
Q  51 cttgataactcatgaccataaatattttttgggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaag 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2000006 cttgataactcatgaccataaatattttttgggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaag 2000105  T
Q  151 gaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaatttaatggagaattgattctagttaactcaaaaggtaggaatt 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2000106 gaaatttgacaaaggataataaaggaaaataatgggttgtaataatcaaaatataaatttaatggagaattgattctagttaactcaaaaggtaggaatt 2000205  T
Q  251 atagcttcaaccagaattatttttgttaagttgaagcaaacctgtaagaaattgcttttttcaattatgagattgtagatgtg 333  Q
     ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2000206 gtagcttcaaccagaattgtttttgtaaagttgaaccaaacctgtaagaaattgcttttttcaattatgagattgtagatgtg 2000288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 74 - 268
Target Start/End: Complemental strand, 32450988 - 32450794
Alignment:
Q  74 attttttgggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaa 173  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||| | |||| |||||| | ||||    
T  32450988 atttttggggataatttggttcgttaaatttttt-attaaatttggttcatcaaattaaatacaaactaaaaagaaggataattgataaaggacagtaaa 32450890  T
Q  174 ggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    | |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||    
T  32450889 gaaaaataatgggttgtaataatcaaaatataaaatttattggagaattgattctagttaactcaaaagttagaaattgtagcttcaaccaaaatt 32450794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 47085528 - 47085744
Alignment:
Q  56 taactcatgaccataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaag--ga 152  Q
    ||||||||||||||||||||||| || || |||||||||||  ||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||   ||    
T  47085528 taactcatgaccataaatattttatgaggttaatttggttccataaattttttgattaaatttggttcatcaaattaaatacaaacaaaaaaaaaataga 47085627  T
Q  153 aatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaattt-aatggagaattgattctagttaactcaaaaggtaggaatta 251  Q
     | |||| |||||| ||||||| ||||||||  ||||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||     
T  47085628 gaattgataaaggacaataaagaaaaataatgagttgtaataattaaaatataaatttcaatggagaattaattctagtaaactcaaaagttaggaattg 47085727  T
Q  252 tagcttcaaccagaatt 268  Q
    || ||||||||| ||||    
T  47085728 taacttcaaccaaaatt 47085744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 51 - 229
Target Start/End: Original strand, 43664651 - 43664830
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg-ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    ||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||| |||||||||    
T  43664651 cttgataactcgtgaccataaacatttttgggggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 43664750  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctag 229  Q
    ||| | || | ||| |  ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  43664751 ggagaatt-ataaaaggcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattctag 43664830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 260
Target Start/End: Original strand, 298495 - 298707
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg-gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatac--aaaccaaaaag 147  Q
    |||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||||| ||| |||||||||||||   ||  |||||     
T  298495 cttgataactcatgaccataaatattttctggagctaatttggattgttaaattttttgattaaatttggttcatcaaattaaatacttcaaaaaaaaaa 298594  T
Q  148 aaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtagg 246  Q
    ||||| | |||| |||| | |||||| ||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||| || |    
T  298595 aaggagaattgataaagaacaataaatgaaaataat-ggttgtaataattaaaatataaaatttaatggagaattgattctagtaaacttaaaagctaag 298693  T
Q  247 aattatagcttcaa 260  Q
    |||| |||||||||    
T  298694 aattgtagcttcaa 298707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 275
Target Start/End: Complemental strand, 15000126 - 14999904
Alignment:
Q  56 taactcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| ||||||   ||||||||| ||||| |||| |||| |||||||||||| ||| ||||||||| ||||||  |||||||||||     
T  15000126 taactcatgaccataaacatttttcaggggctaattaggttctttaagttttctgattaaatttggttcatcaaattaattacaaagaaaaaagaaggag 15000027  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
      |||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||  ||  |||||  |||||||| |    
T  15000026 gattgataaagggtaataaaggaaaataatagattgtaataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaaattaggaattgt 14999927  T
Q  253 agcttcaaccagaattatttttg 275  Q
    ||||| ||  ||||||| |||||    
T  14999926 agctttaaggagaattacttttg 14999904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 25472608 - 25472781
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    |||| ||||||||||||||| |||  ||||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| |||||||||||| | |    
T  25472608 tcattaccataaatatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaat 25472707  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||| |||||  ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  25472708 tgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 25472781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 26827607 - 26827779
Alignment:
Q  56 taactcatgaccataaatattttttg--ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| |||||| |  ||||||||||||||||||| |||    |||||||||| ||| ||||||||| |||||| ||||||||||||     
T  26827607 taactcatgaccataaacatttttcgagggctaatttggttcgttaagttt----attaaatttggttcatcaaattaattacaaagcaaaaagaaggag 26827702  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctag 229  Q
    | |||| |||||| ||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  26827703 aattgataaaggacaataaagaaaaataatagattgtaataatcaaaatataaaatttaatgtagaattgattctag 26827779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 60 - 275
Target Start/End: Complemental strand, 25970687 - 25970469
Alignment:
Q  60 tcatgaccataaatattttttg--ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaattt 157  Q
    ||||||||||||||||||||||  |||||||||| |   |||| |||| | |||||||||| ||| |||||||||  ||||| |||||||||||| | ||    
T  25970687 tcatgaccataaatattttttgatggctaatttgatctattaagttttctcattaaatttggttcatcaaattaataacaaagcaaaaagaaggagaatt 25970588  T
Q  158 gacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagct 256  Q
    || ||||   ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||   ||  |||||| |||||||| |||||    
T  25970587 gataaagagcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattctaagaaagccaaaagctaggaattgtagct 25970488  T
Q  257 tcaaccagaattatttttg 275  Q
    | ||  ||||||| |||||    
T  25970487 ttaaagagaattacttttg 25970469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 169 - 275
Target Start/End: Complemental strand, 39857220 - 39857113
Alignment:
Q  169 ataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaat 267  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||| |||||||    
T  39857220 ataaaggaaaataatgggttgtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctatgaattgtagcttcatccagaat 39857121  T
Q  268 tatttttg 275  Q
    || |||||    
T  39857120 tacttttg 39857113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 30825447 - 30825274
Alignment:
Q  56 taactcatgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| |||| | |||   |||||||||| ||||| |||| |||||||||||| ||  ||||||||| |||||| ||||||||||||     
T  30825447 taactcatgaccataaacatttatcgggggataatttggttggttaagttttctgattaaatttggtta-tcaaattaattacaaaacaaaaagaaggag 30825349  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattct 227  Q
    | |||| |||||  ||||||| ||||||||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  30825348 aattgataaagggcaataaagaaaaataataggttgtaataattaaaatattaaatttaatgtagaattgattct 30825274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 57 - 259
Target Start/End: Original strand, 25191703 - 25191897
Alignment:
Q  57 aactcatgaccataaatattttttgggct-aatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaacc-aaaaagaaggaaa 154  Q
    ||||| ||| ||||||||||||||||| | ||||||||||||||||| ||||||| || |||| ||| || ||||||||||||||| ||||||||||| |    
T  25191703 aactcttgatcataaatattttttggggttaatttggttcgttaaatcttttgatcaactttggttcatcgaattaaatacaaaccaaaaaagaaggaga 25191802  T
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaatttaatggagaattgattctagttaactcaaaaggtaggaattatag 254  Q
     |||| |||||| |||||| |||||||||  ||||| ||||||||||||||          | |||||||||||||||||||||||| ||| |||||||     
T  25191803 attgataaaggacaataaaagaaaataatgagttgttataatcaaaatata----------ataattgattctagttaactcaaaagctagaaattataa 25191892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 81 - 228
Target Start/End: Original strand, 30139695 - 30139844
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaa 179  Q
    |||||||||||||||||||| |||| | |||||||||| ||  ||||||||||| ||||| |||||||||||| | |||| |||||  ||||||||||||    
T  30139695 gggctaatttggttcgttaagttttctaattaaatttggtttatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 30139794  T
Q  180 taataggttgtaataatcaaaata-taaatttaatggagaattgattcta 228  Q
    ||||||||| ||||||||||||||  |||||||| | |||||||||||||    
T  30139795 taataggttataataatcaaaatagaaaatttaacgtagaattgattcta 30139844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 26826630 - 26826468
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| |||||| |||  ||||||||||||||||| |||| |||||||||||| ||| ||| ||||| |||||| ||||||||||||     
T  26826630 taactcatgaccataaacatttttcgggggctaatttggttcgttaagttttctgattaaatttggttcatcacattaattacaaagcaaaaagaaggag 26826531  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgatt 225  Q
    | |||          ||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  26826530 aattg----------ataaaggaaaataataggttgtaataagcaaaatataaattttaatgtagaattgatt 26826468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 275
Target Start/End: Complemental strand, 45202701 - 45202507
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaat 180  Q
    ||||||||||||||| |||| |||| ||||| |||| | ||| | ||||||| | |||| ||||||||| || | |||| |||| | ||||||| |||||    
T  45202701 gggctaatttggttctttaagttttctgatttaattgg-ttcattaaattaatttcaaagcaaaaagaatgagaattgataaagaacaataaagaaaaat 45202603  T
Q  181 aataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattatttttg 275  Q
    ||||| |||||||||| |||||||||| |||| ||||||||||||||||||||||  ||||| ||  |||| | | |||||||| |||| ||||||    
T  45202602 aatagattgtaataattaaaatataaaatttattggagaattgattctagttaacctaaaagctaaaaattgtggtttcaaccaaaattgtttttg 45202507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 47158058 - 47158235
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg-gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||||||||| |||||||||||| ||| |||||||||||||||||| |||| | ||||||| || ||| |||||| ||||||||| |||||| ||    
T  47158058 cttggtaactcatgatcataaatattttctggagctaatttggttcgttaagttttctaattaaatatggttcatcaaat-aaatacaaagcaaaaaaaa 47158156  T
Q  150 g--gaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgatt 225  Q
       || | |||| |||||  ||||||| |||||||||| || ||||||| |||||||||| ||||||||||||||||||    
T  47158157 aaagagaattgataaagggcaataaagaaaaataatagattataataataaaaatataaaatttaatggagaattgatt 47158235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 19544647 - 19544575
Alignment:
Q  203 ataaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattatttttg 275  Q
    |||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||||| |||||    
T  19544647 ataaatttaatggagaattgattctagtaaactcaaaagctatgaattgtagcttcaaccataattacttttg 19544575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 37371255 - 37371161
Alignment:
Q  136 caaaccaaaaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    |||| |||||||||||| | |||| |||||  ||||||||||||| ||| ||||||||||||||||||  |||||||||| ||||||||||||||    
T  37371255 caaagcaaaaagaaggagaattgataaagggcaataaaggaaaatcataagttgtaataatcaaaatagaaaatttaatgtagaattgattctag 37371161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 47238931 - 47239024
Alignment:
Q  176 aaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    |||||||  |||||||| || ||||||||||| ||||||| |||||||||||||  ||||||||||| ||||||   |||||||||||| ||||    
T  47238931 aaaataaccggttgtaacaaccaaaatataaaatttaatgcagaattgattctaactaactcaaaagttaggaacggtagcttcaaccataatt 47239024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 26169811 - 26169891
Alignment:
Q  56 taactcatgaccataaatattttttgggct-aatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaata 135  Q
    ||||||||||| ||||||||||| | || | ||||||  | ||||||||||||||||||||||| ||| ||||||||||||    
T  26169811 taactcatgacgataaatattttgtaggattaatttgaattgttaaattttttgattaaatttggttcatcaaattaaata 26169891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 10900394 - 10900175
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg-ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||||||||||||||||| |||| |||| ||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||| |||||||||    
T  10900394 cttggtaactcatgaccataaatcttttatggggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 10900295  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
     || | |||| |||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||||||    
T  10900294 agagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagttaggaa 10900195  T
Q  249 ttatagcttcaaccagaatt 268  Q
    || |||||||| ||||||||    
T  10900194 ttgtagcttcatccagaatt 10900175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 56 - 275
Target Start/End: Original strand, 33387540 - 33387758
Alignment:
Q  56 taactcatgaccataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaa 154  Q
    ||||||||||||||||||||||| || ||||||||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |      
T  33387540 taactcatgaccataaatattttctgaggctaatttagttcattaatttttttgattaaatttggttcatcaaattaaatacaaaccaaaaagaagaa-- 33387637  T
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattata 253  Q
     ||||  |||||  ||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| | || |||||||||| |||||||| ||    
T  33387638 -ttgatgaaggacgataaaggaaaataatgggttgtaataattaaaatataaaatttaatggagaattgattatggtcaactcaaaagttaggaattgta 33387736  T
Q  254 gcttcaaccagaattatttttg 275  Q
    ||||||||||||||| ||||||    
T  33387737 gcttcaaccagaattgtttttg 33387758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 40979669 - 40979462
Alignment:
Q  63 tgaccataaatattttttgggc-taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgaca 161  Q
    |||||||||||||||| ||||  |||||||||| ||||  |||| |||||||||||| ||| |||||||||||||||  |||||||||||| | |||| |    
T  40979669 tgaccataaatattttatgggggtaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaggcaaaaagaaggagaattgata 40979570  T
Q  162 aaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaa 260  Q
    ||||  ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |||||||| ||||||||     
T  40979569 aagggcaataaaggagaataataggttgtaataatcaaaatataaaatttattggagaattgattatagctaactcaaaagctaggaattgtagcttcat 40979470  T
Q  261 ccagaatt 268  Q
    ||||||||    
T  40979469 ccagaatt 40979462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 68 - 263
Target Start/End: Original strand, 25256667 - 25256864
Alignment:
Q  68 ataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaagga 166  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||| | |||| ||||||    
T  25256667 ataaatattttctgaggctaatttggttcgttatattttttgattaaatttggttcatcaaattaaatacaaaccaaaaaaaaggagaattgataaagga 25256766  T
Q  167 -taataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaacca 263  Q
      || ||||||||||||  |||||||||||| ||||||| |||||| ||||| ||||||||||| | |||||||||| || ||||||||||| ||||||    
T  25256767 caaagaaaggaaaataa-gggttgtaataattaaaatataaaatttcatggataattgattctattaaactcaaaagttatgaattatagctccaacca 25256864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 68 - 263
Target Start/End: Original strand, 25320458 - 25320655
Alignment:
Q  68 ataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaagga 166  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||||| | |||| ||||||    
T  25320458 ataaatattttctgaggctaatttggttcgttatattttttgattaaatttggttcatcaaattaaatacaaaccaaaaaaaaggagaattgataaagga 25320557  T
Q  167 -taataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaacca 263  Q
      || ||||||||||||  |||||||||||| ||||||| |||||| ||||| ||||||||||| | |||||||||| || ||||||||||| ||||||    
T  25320558 caaagaaaggaaaataa-gggttgtaataattaaaatataaaatttcatggataattgattctattaaactcaaaagttatgaattatagctccaacca 25320655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 41742065 - 41742238
Alignment:
Q  60 tcatgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    |||||||||||||||||||||||||  |||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| |||||||||||| | |    
T  41742065 tcatgaccataaatattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaat 41742164  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||| |||||  ||||||| ||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||    
T  41742165 tgataaagggcaataaagaaaaataataggttgtaacaatcaaaatagaaaatttaatgtagaattgattctag 41742238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 2526440 - 2526327
Alignment:
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaatttaatggagaattgattctagttaactcaaaaggtaggaattatag 254  Q
    ||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||    
T  2526440 tttgataaaggacaataaaggaaaataatgggttgtaataatcaaaatataaaattaatggagaattgattctagttaactcaaaagctaggaattgtag 2526341  T
Q  255 cttcaaccagaatt 268  Q
    ||||| ||||||||    
T  2526340 cttcatccagaatt 2526327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 275
Target Start/End: Original strand, 33082763 - 33082968
Alignment:
Q  69 taaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggat 167  Q
    |||||||||| || ||||| ||| ||||||||| ||||| ||||||||||| ||| | ||||||||||||||||||||||||  |   ||||  || ||     
T  33082763 taaatattttatgaggctagtttagttcgttaattttttcgattaaatttggttcattaaattaaatacaaaccaaaaagaataa---ttgatgaaagac 33082859  T
Q  168 aataaaggaaaataataggttgtaataatcaaaatataaattta-atggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaa 266  Q
    ||||||| |||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| | |||||  |||||| ||||||||    
T  33082860 aataaagaaaaataattggttgtaataattaaaatataaaattagatggagaattgattctagttaactcaaaagtttggaatggtagctttaaccagaa 33082959  T
Q  267 ttatttttg 275  Q
    ||| |||||    
T  33082960 ttaattttg 33082968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 62 - 225
Target Start/End: Complemental strand, 31905683 - 31905516
Alignment:
Q  62 atgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatttg 158  Q
    |||||||||||||||||||||||  |||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| |||||||||||| | |||    
T  31905683 atgaccataaatattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattg 31905584  T
Q  159 acaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgatt 225  Q
    | |||||  |||||||||||||||||| || ||||||||||||||  |||||||||| | ||||||||    
T  31905583 ataaagggcaataaaggaaaataatagattttaataatcaaaatagaaaatttaatgtaaaattgatt 31905516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 59 - 228
Target Start/End: Original strand, 11018272 - 11018444
Alignment:
Q  59 ctcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatt 156  Q
    ||||||||||||||||||||    |||||||||||||||| ||| ||||||||||||||||| ||| ||||||||| || ||| ||||| |||||  | |    
T  11018272 ctcatgaccataaatattttacaggggctaatttggttcgctaagttttttgattaaatttggttcatcaaattaattagaaagcaaaaggaaggggaat 11018371  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattcta 228  Q
    ||  |||||| ||||||||||||||||||||| ||||||| ||||||| |||||||||| | |||||||||||    
T  11018372 tgctaaaggacaataaaggaaaataataggttctaataattaaaatataaaatttaatgtataattgattcta 11018444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 53534 - 53722
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaat 180  Q
    |||||||||||||||||||| |||| | |||||||| | ||| |||||| || || ||| |||||| || || | |||| |||||  |||||||  ||||    
T  53534 gggctaatttggttcgttaagttttctaattaaattcggttcatcaaatcaattaaaaagcaaaaaaaatgagaattgataaagggcaataaagagaaat 53633  T
Q  181 aataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    |||||||||||||||| ||||||| ||||||| |||| |||||||| |||||||| |||||| |||||||| |||||||||||| ||||    
T  53634 aataggttgtaataattaaaatataaaatttattggataattgattatagttaacccaaaagctaggaattgtagcttcaaccataatt 53722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 275
Target Start/End: Original strand, 41039976 - 41040198
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| |||||| |||  |||||||| || | ||| |||| |||||||||||  ||| ||||||||| |||||| ||||||||| ||     
T  41039976 taactcatgaccataaacatttttcgggggctaatttgatttgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaagag 41040075  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
    | |||| |||||  ||||||| ||||||||||||||||||||||||||| | |||||||| | |||||||||||| |  ||  |||||| ||||| || |    
T  41040076 aattgataaagggcaataaagaaaaataataggttgtaataatcaaaatttaaaatttaacgtagaattgattcttgaaaagccaaaagctaggatttgt 41040175  T
Q  253 agcttcaaccagaattatttttg 275  Q
    ||||||||  | |||||||||||    
T  41040176 agcttcaaggataattatttttg 41040198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 60 - 274
Target Start/End: Original strand, 8958347 - 8958564
Alignment:
Q  60 tcatgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaattt 157  Q
    ||||||||||||| ||||| ||||   |||||||||| ||||| |||  |||||||||||| ||| ||||||||| |||||| ||||||||| || | ||    
T  8958347 tcatgaccataaacattttatgggggttaatttggttggttaagtttcctgattaaatttggttcatcaaattaattacaaagcaaaaagaatgagaatt 8958446  T
Q  158 gacaaaggataataaaggaaaataataggttgtaataatcaaaa-tataaatttaatggagaattgattctagttaactcaaaaggtaggaattatagct 256  Q
    || ||||| |||||||| ||||||||||||||| |||||||||| | |||||||| || ||||||||||||||  ||  |||||  |||||||| |||||    
T  8958447 gataaagggtaataaagaaaaataataggttgttataatcaaaattttaaatttagtgtagaattgattctaggaaagccaaaaattaggaattgtagct 8958546  T
Q  257 tcaaccagaattattttt 274  Q
    | ||  |||||| |||||    
T  8958547 ttaaggagaattgttttt 8958564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 268
Target Start/End: Original strand, 19375361 - 19375461
Alignment:
Q  169 ataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaat 267  Q
    ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||||||||||| |||||||| |||||||| |||||||    
T  19375361 ataaaggaaaataataggttgtaataatcaaaatataaaatttattagagaattgattctagctaactcaaaagttaggaattgtagcttcatccagaat 19375460  T
Q  268 t 268  Q
    |    
T  19375461 t 19375461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 2526536 - 2526468
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg-ctaatttggttcgttaaattttttgattaaatttg 118  Q
    |||| ||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2526536 cttggtaactcatgtccgtaaatattttatggggctaatttggttcgttaaattttttgattaaatttg 2526468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 19356702 - 19356583
Alignment:
Q  112 aaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatt 209  Q
    ||||||| ||| ||||||||||| |||||  ||||||||||| | |||| |||||  ||||| | |||||||||| |||||||||| ||||||  |||||    
T  19356702 aaatttgattcatcaaattaaattacaaaggaaaaagaaggagaattgataaagggcaataatgaaaaataatagattgtaataataaaaatagaaaatt 19356603  T
Q  210 taatggagaattgattctag 229  Q
    ||||| ||||||||||||||    
T  19356602 taatgtagaattgattctag 19356583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 56 - 268
Target Start/End: Original strand, 50523711 - 50523926
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |||||||||| |     
T  50523711 taactcatgaccataaatattttatgggggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaagaag 50523810  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
    | |||| |||||  ||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| |    
T  50523811 aattgataaagggcaataatggaaaataacaggttgtaataatcaaaatattaaatttattggagaattgattctagctaactcaaaagctaggaattgt 50523910  T
Q  253 agcttcaaccagaatt 268  Q
    ||||||| ||||||||    
T  50523911 agcttcatccagaatt 50523926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 39733073 - 39732853
Alignment:
Q  51 cttgataactcatgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| ||||||||||||||||||||||| ||||   |||||||||| ||||  |||| |||||||||||| ||| |||||||||||||||| ||||||||    
T  39733073 cttggtaactcatgaccataaatattttatgggggttaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaagcaaaaaga 39732974  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtagga 247  Q
    |||| | |||| |||||   |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||    
T  39732973 aggagaattgataaagggcgataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctagga 39732874  T
Q  248 attatagcttcaaccagaatt 268  Q
    ||| |||||||| ||||||||    
T  39732873 attgtagcttcatccagaatt 39732853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 16202933 - 16203149
Alignment:
Q  51 cttgataactcatgaccataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||||||||||||||||||||||  | ||||||||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  16202933 cttggtaactcatgaccataaatattttccgaggctaatttagttcattaatttttttgattaaatttggttcatcaaattaaatacaaaccaaaaagaa 16203032  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
    | |   ||||  |||||  ||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  16203033 gaa---ttgatgaaggacgataaaggaaaataatgggttgtaataattaaaatataaaatttaatggagaattgattctagtcaactcaaaagctaggaa 16203129  T
Q  249 ttatagcttcaaccagaatt 268  Q
    || |||||||||||| ||||    
T  16203130 ttgtagcttcaaccaaaatt 16203149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 53663475 - 53663679
Alignment:
Q  56 taactcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| ||||||   ||||||||| |||||||||| |||| |||||||||||| ||| ||||||||| |||||| ||||||||||||     
T  53663475 taactcatgaccataaacatttttcaggggctaattaggttcgttaagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggag 53663574  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
      |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||  ||  |||||| |||||||| |    
T  53663575 gattgataaagggtaataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattataggaaagccaaaagttaggaattgt 53663674  T
Q  253 agctt 257  Q
    |||||    
T  53663675 agctt 53663679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 28911841 - 28911624
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg-ctaatttggttcgttaaatttttt-gattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| |||||||||  |||||||||||| |||| |||||||||||||||||||||||| ||||||||||| | | ||||||||||||||||  ||||| |    
T  28911841 cttggtaactcatgttcataaatattttatggggctaatttggttcgttaaatttttttgattaaatttggtcc-tcaaattaaatacaaaaaaaaaaaa 28911743  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtagga 247  Q
    |   ||||  |||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  28911742 aaagaatta-acaagggata-taaaggaaaataatgggttgtaataatcaaaatataaaatttaatggagaattgattttagttaactcaaaagttagga 28911645  T
Q  248 attatagcttcaaccagaatt 268  Q
    ||| |||||||| ||| ||||    
T  28911644 attgtagcttcatccacaatt 28911624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 51 - 263
Target Start/End: Complemental strand, 51677360 - 51677150
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg-gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||||||||| |||||||||||  ||| |||||||||| ||||| ||||||||||||||||||| ||| |||||||||||| |||    ||||||    
T  51677360 cttggtaactcatgatcataaatatttcctggagctaatttggatcgttgaattttttgattaaatttggttcatcaaattaaataaaaa----aaagaa 51677265  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
    ||| | |||| |||||  |||||| |||||||||  | ||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||| ||||||    
T  51677264 ggagaattgataaagggaaataaaagaaaataatgagctgtaataattaaaatataaaatttaatggaaaattgattctagtaaactcaaaagttaggaa 51677165  T
Q  249 ttatagcttcaacca 263  Q
    || ||||||||||||    
T  51677164 ttgtagcttcaacca 51677150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 259
Target Start/End: Original strand, 22606201 - 22606406
Alignment:
Q  57 aactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaa 154  Q
    |||||||||||||||| |||||| |||  ||||||||||||| ||| |||| |||||||||||  ||| ||||||||| |||||| |||||||||||| |    
T  22606201 aactcatgaccataaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggaga 22606300  T
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattata 253  Q
     |||| |||||  ||||||| ||||||||||| ||||||||||||||||| |||||||||  |||||||||||| |  || ||||||| ||||| || ||    
T  22606301 attgataaagggcaataaagaaaaataataggctgtaataatcaaaatataaaatttaatatagaattgattcttggaaagtcaaaagctaggatttgta 22606400  T
Q  254 gcttca 259  Q
    ||||||    
T  22606401 gcttca 22606406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 30418231 - 30418413
Alignment:
Q  54 gataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaag 150  Q
    ||||| ||||||||||||| |||||| |||  |||||||| |||||||| |||| | |||||||||| ||| ||||||||||| ||||| ||||||||||    
T  30418231 gataagtcatgaccataaacatttttcgggggctaatttgattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaag 30418330  T
Q  151 gaaatttgacaaaggataa---taaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    || | |||| |||||| ||   ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  30418331 gagaattgataaaggagaacaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 30418413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 53403956 - 53404155
Alignment:
Q  56 taactcatgaccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| |||||| ||  |||||||||||||||||  |||| |||||     || ||| ||||||||| |||||| |||||| |||||     
T  53403956 taactcatgaccataaacatttttcggtggctaatttggttcgttatgttttctgatt-----tggttcatcaaattaattacaaagcaaaaaaaaggag 53404050  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
    | |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| | ||||||||||||  ||  |||||| |||||||| |    
T  53404051 aattgataaaggataataaaggaaaacaataggttgtaataatcaaaatataaaatttaatgtaaaattgattctaggaaaaccaaaagctaggaattgt 53404150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 38768049 - 38767875
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||| ||||||||| ||||||  ||  ||||||||||||| ||| ||||  ||||||||||  ||| ||||||||| |||||| ||||||||||||     
T  38768049 taactcacgaccataaacatttttcaggtgctaatttggttcgctaagttttccgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 38767950  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattct 227  Q
    | |||| ||||   ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  38767949 aattgataaagtgaaataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattct 38767875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 49724038 - 49723865
Alignment:
Q  56 taactcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| ||||||   || ||||||||||||||||| |||| |||||||||||| ||  ||||||||| |||||| ||||||||||||     
T  49724038 taactcatgaccataaacatttttcaaggactaatttggttcgttaatttttctgattaaatttggtttatcaaattaattacaaagcaaaaagaaggag 49723939  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctag 229  Q
    | |  | |||||  ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  49723938 aat--ataaagg-gaataaaggaaaataataggttgtaataatcaaaatataaaatttaatatagaattgattctag 49723865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 56 - 225
Target Start/End: Complemental strand, 48407210 - 48407038
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    |||||||||||||||||||||||| |||  |||||||| |||| ||  |||| |||||||||||  ||| ||||||||| |||||| ||||||||| ||     
T  48407210 taactcatgaccataaatatttttcgggggctaatttgattcgctacgttttatgattaaattttgttcatcaaattaattacaaagcaaaaagaaagag 48407111  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgatt 225  Q
    | |||| |||||  ||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||||||    
T  48407110 aattgataaagggcaataaagaaaaataatagattgtaataatcaaaatataaaatttaatgtagaattgatt 48407038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 28963704 - 28963884
Alignment:
Q  52 ttgataactcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaaga 148  Q
    ||||||| ||||||||||||| ||||||   ||||||||||  |||||||| |||| | |||||||||| ||| ||||||||||| ||||| ||||||||    
T  28963704 ttgataagtcatgaccataaacatttttcaagggctaatttaattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 28963803  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    | || | |||| |||||  ||||||| ||||||||||||||||||||||||||||  |||||||||  ||||||||||||||    
T  28963804 aagagaattgataaagggcaataaag-aaaataataggttgtaataatcaaaatagaaaatttaatatagaattgattctag 28963884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 268
Target Start/End: Original strand, 5937797 - 5937898
Alignment:
Q  168 aataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaa 266  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||| ||    
T  5937797 aataagggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccataa 5937896  T
Q  267 tt 268  Q
    ||    
T  5937897 tt 5937898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 229
Target Start/End: Complemental strand, 45106069 - 45105888
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| ||||||||||||||||| | |||| |||  |||| |||||| ||||| |||| | |||||||||| ||| ||||||||| ||||||  |||||||    
T  45106069 cttggtaactcatgaccataaacaattttcgggggctaaattggttggttaagttttcttattaaatttggttcatcaaattaattacaaagtaaaaaga 45105970  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    | || | |||| |||||  | ||||||||||||||||| | |||||||||||||| |||||| |||| ||||||||||||||    
T  45105969 aagagaattgataaagggaagtaaaggaaaataataggctttaataatcaaaatattaaattgaatgtagaattgattctag 45105888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 260
Target Start/End: Complemental strand, 26457342 - 26457162
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaat 180  Q
    ||||||||||| ||||| || |||| | |||||||| | | | |||||| || || ||| ||||||||| || | |||| ||||   |||||||| ||||    
T  26457342 gggctaatttgattcgtcaagttttctaattaaattcggtacatcaaatcaattaaaaagcaaaaagaatgagaattgataaagagcaataaagggaaat 26457243  T
Q  181 aataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaa 260  Q
    |||||| ||||||||| |||||||||| |||| |||||||||||||||||||||| |||||| ||| |||| |||||||||    
T  26457242 aataggatgtaataattaaaatataaaatttattggagaattgattctagttaacccaaaagctagaaattgtagcttcaa 26457162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 29385888 - 29386052
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaattt 157  Q
    |||||||| ||||||||||| |||  |||||||||||||||||||||| | |||||||||| ||| |||       |||||| |||||||||||| | ||    
T  29385888 tcatgaccttaaatatttttcgggggctaatttggttcgttaaattttctaattaaatttgattcatca-------tacaaagcaaaaagaaggagaatt 29385980  T
Q  158 gacaaaggataataaaggaaaataataggttgtaataatcaaaat-ataaatttaatggagaattgattctag 229  Q
    || |||||  | ||||| ||||||||||||||||||||||||||| | ||||||| || ||||||||||||||    
T  29385981 gataaagggca-taaagaaaaataataggttgtaataatcaaaataaaaaatttattgtagaattgattctag 29386052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 8503904 - 8503818
Alignment:
Q  176 aaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaac 261  Q
    ||||||||||||| |||||||||||||||||| |||| |||| ||||||||||||||||| |||||| |||||||| ||||||||||    
T  8503904 aaaataataggttataataatcaaaatataaaatttattggaaaattgattctagttaacacaaaagttaggaattgtagcttcaac 8503818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 8510420 - 8510305
Alignment:
Q  51 cttgataactcatgaccataaatatttttt-gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||||||| |||| |||||||||||| ||| | |||||| ||||||| ||||| |||    
T  8510420 cttgataattcatgaccataattattttctagggctaatttggttcgttaagttttctgattaaatttggttcattaaattagatacaaagcaaaaggaa 8510321  T
Q  150 ggaaatttgacaaagg 165  Q
    ||| | |||| |||||    
T  8510320 ggagaattgataaagg 8510305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 5937728 - 5937789
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgat 110  Q
    |||| |||||||||| |||||||||||| ||||  ||||||||||||||||| |||| ||||    
T  5937728 cttggtaactcatgatcataaatattttatgggggctaatttggttcgttaagttttctgat 5937789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 51 - 257
Target Start/End: Complemental strand, 13015941 - 13015733
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg-gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  13015941 cttggtaactcttgaccataaatatttttttgtgctaatttgattcgttaaattttttgattaaatttgattcatcaaattaaatacaaaccaaaaagaa 13015842  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
     || | |||| |||||| |||||||||||||||   ||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| ||||||    
T  13015841 agagaattgataaaggacaataaaggaaaataacgagttgtaataatcaaaatataaaatttaatgtagaattgattctcgttaactcaaaagttaggaa 13015742  T
Q  249 ttatagctt 257  Q
    || ||||||    
T  13015741 ttgtagctt 13015733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 275
Target Start/End: Complemental strand, 3590332 - 3590110
Alignment:
Q  51 cttgataactcatgaccataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| ||||||||||||||||||||||| || ||||||||| ||||||||| |||||| |||||||||| ||| ||||||||||||||||| ||||||||    
T  3590332 cttggtaactcatgaccataaatattttctgaggctaatttagttcgttaattttttt-attaaatttggttcatcaaattaaatacaaactaaaaagaa 3590234  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
    | |   ||||  ||||| |||||| |||||||||  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  3590233 gaa---ttgatgaaggacaataaaagaaaataatttgttgtaataattaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaa 3590137  T
Q  249 ttatagcttcaaccagaattatttttg 275  Q
    || ||||||||||||||||| ||||||    
T  3590136 ttgtagcttcaaccagaattgtttttg 3590110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 2025776 - 2025556
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| ||||||||||||| ||||||||| ||||  ||||||| ||||||||| |||| |||||||||||| ||| |||||||||||||||| ||||||||    
T  2025776 cttggtaactcatgaccacaaatattttatgggggctaatttagttcgttaagttttatgattaaatttggttcatcaaattaaatacaaagcaaaaaga 2025677  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtagga 247  Q
    |||| | |||| |||||  ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||  |||||    
T  2025676 aggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatatattggagaattgattctagctaactcaaaaactagga 2025577  T
Q  248 attatagcttcaaccagaatt 268  Q
    ||| |||||||| ||| ||||    
T  2025576 attgtagcttcatccaaaatt 2025556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 81 - 274
Target Start/End: Complemental strand, 33166023 - 33165828
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaat 180  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||| | |||| |||||| |||||||||||||    
T  33166023 gggctaatttggttcgttaaattttttgattaaatttgtttcctcaaattaaatacaaaccataaaaaaggagaattgataaaggacaataaaggaaaat 33165924  T
Q  181 aataggttgtaataatc-aaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattattttt 274  Q
    ||| ||||||||||||| ||||||| |||||||||||||||||||||||||  ||  |||||  ||||||||||||||| ||  ||||||| ||||    
T  33165923 aatgggttgtaataatcaaaaatataaaatttaatggagaattgattctagaaaaaccaaaaattaggaattatagctttaaggagaattactttt 33165828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 35802184 - 35802360
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| |||||| |||  ||||||||||| ||||| |||| ||||||||||   ||| ||||||||| || ||| ||||||||||||     
T  35802184 taactcatgaccataaacatttttcgggggctaatttggtttgttaagttttctgattaaattgtgttcatcaaattaattataaagcaaaaagaaggag 35802283  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctag 229  Q
    | |||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  35802284 aattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattctag 35802360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 64 - 229
Target Start/End: Original strand, 22936418 - 22936586
Alignment:
Q  64 gaccataaatattttttggg-ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatttgaca 161  Q
    |||||||||||||||| ||| ||||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| |||||||||||| | |||| |    
T  22936418 gaccataaatatttttgggggctaatttggttcgttaacttttctaattaaatttggttcatcaaattaaattacaaaacaaaaagaaggagaattgata 22936517  T
Q  162 aaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||||  |||||||||||||||||||||||||||||| |||||  |||||||||| ||||||||||||||    
T  22936518 aaggccaataaaggaaaataataggttgtaataatcgaaatagaaaatttaatgtagaattgattctag 22936586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 227
Target Start/End: Original strand, 36821461 - 36821641
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaatttt-ttgattaaatttgcttcgtcaaattaaatacaaaccaaaaag 147  Q
    |||| |||||||| ||||| ||||||||| |||  ||||||||||||| ||| |||| ||||||||||||| ||| ||||||||| || ||| |||||||    
T  36821461 cttggtaactcataaccattaatatttttcgggggctaatttggttcgctaagtttttttgattaaatttggttcatcaaattaattagaaagcaaaaag 36821560  T
Q  148 aaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattct 227  Q
    || || | |||  ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  36821561 aatgagaattgttaaagggtaataaaggaaaataataggttgtaataatcaaaatataaaatttaatgtaaaattgattct 36821641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 260
Target Start/End: Original strand, 35164221 - 35164428
Alignment:
Q  56 taactcatgaccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| |||| | ||  |||||||||||| ||||| |||| |||||||||||| ||| ||||| ||| |||||| ||||||||||||     
T  35164221 taactcatgaccataaacatttatcggaggctaatttggttggttaagttttctgattaaatttggttcatcaaactaattacaaaacaaaaagaaggag 35164320  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
    | || | |||||  |||||| |||||||||| ||||||||||| |||||| ||||||||||| ||||||||||| ||  || ||||||  |||||||| |    
T  35164321 aattaataaagggcaataaaagaaaataataagttgtaataattaaaatattaaatttaatgtagaattgattcgaggaaagtcaaaaactaggaattgt 35164420  T
Q  253 agcttcaa 260  Q
    ||||||||    
T  35164421 agcttcaa 35164428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 45276247 - 45276419
Alignment:
Q  60 tcatgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    |||||||| |||| |||||||||||  |||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| ||||||| |||| | |    
T  45276247 tcatgacc-taaacattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagtaggagaat 45276345  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||| |||||  || |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  45276346 tgataaagggcaacaaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 45276419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 8416917 - 8416744
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    ||||||||||||| |||||| |||  |||||||||||||| || |||| | ||||| |||| ||| ||| ||| ||| ||||| ||||||||||||   |    
T  8416917 tcatgaccataaacatttttcgggtgctaatttggttcgtgaagttttctaattaattttggttcatcatatttaattacaaagcaaaaagaaggagtat 8416818  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||| |||||  ||||||||||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||    
T  8416817 tgataaagggcaataaaggaaaataataagttgtaataatcaaaatagaaaatttaatgtagaattgattctag 8416744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 924274 - 924137
Alignment:
Q  139 accaaaaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactca 237  Q
    |||| |||||| || | |||| |||||  ||||||| ||||||||||||||||||||||||||||| |||| || ||  |||||||||||||||||  ||    
T  924274 accataaagaaagagaattgataaagggcaataaagaaaaataataggttgtaataatcaaaatataaaatatattgacgaattgattctagttaaacca 924175  T
Q  238 aaaggtaggaattatagcttcaaccagaattatttttg 275  Q
    |||| |||||||| |||||| ||| ||||||| |||||    
T  924174 aaagttaggaattgtagctttaactagaattacttttg 924137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 7637483 - 7637390
Alignment:
Q  59 ctcatgaccataaatattttttggg-ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaagga 152  Q
    ||||||||||||||||||||||||| |||||||||| | |||||||| ||| ||||||||  ||| |||||||||||||||| ||||| ||||||    
T  7637483 ctcatgaccataaatattttttggggctaatttggt-cattaaatttattgtttaaatttatttcatcaaattaaatacaaagcaaaatgaagga 7637390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 38023118 - 38023008
Alignment:
Q  142 aaaaagaaggaaatttgacaaaggataataaaggaaaataa-taggttgtaataatcaaaatataa-atttaatggagaattgattctagttaactcaaa 239  Q
    |||||||| || | |||| |||||||||||||  |||| || | |||| | || |||||||||||| ||||||||||||||||||||||||||||| |||    
T  38023118 aaaaagaatgagaattgataaaggataataaaaaaaaaaaaattggttatgatgatcaaaatataagatttaatggagaattgattctagttaacttaaa 38023019  T
Q  240 aggtaggaatt 250  Q
    ||||| |||||    
T  38023018 aggtaagaatt 38023008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 7636546 - 7636485
Alignment:
Q  207 atttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    ||||||||||||||||||| || |||||||||||  ||||||||||||||||||| ||||||    
T  7636546 atttaatggagaattgattttacttaactcaaaatctaggaattatagcttcaacaagaatt 7636485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 37683982 - 37684068
Alignment:
Q  60 tcatgaccataaatatttttt-gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaa 145  Q
    |||||| ||| |||||||| | ||||||||||||||||| |||||||| ||| ||||||| ||| |||||| ||||||||| |||||    
T  37683982 tcatgatcattaatattttatagggctaatttggttcgtcaaatttttagatcaaatttggttcatcaaatcaaatacaaagcaaaa 37684068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 267
Target Start/End: Original strand, 37684165 - 37684255
Alignment:
Q  178 aataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaat 267  Q
    |||||| ||||||||||| ||||||| ||| ||||||  || |||||||||||| |||||||||| |||||||| || ||||||| |||||    
T  37684165 aataatgggttgtaataaccaaaatacaaaatttaatccagcattgattctagtcaactcaaaagttaggaattgtatcttcaactagaat 37684255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 44002910 - 44002690
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| ||||||||||||||||||||||| ||||  ||||||||||| ||||  |||| |||||||||||| ||| |||||||||||||||| ||||||||    
T  44002910 cttggtaactcatgaccataaatattttatgggggctaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaagcaaaaaga 44002811  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtagga 247  Q
    |||| | |||| |||||   |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||    
T  44002810 aggataattgataaagggcgataaagaaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagctaactcaaaagctagga 44002711  T
Q  248 attatagcttcaaccagaatt 268  Q
    ||| |||||||| ||||||||    
T  44002710 attgtagcttcatccagaatt 44002690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 274
Target Start/End: Complemental strand, 43695205 - 43695001
Alignment:
Q  71 aatattttttggg-ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataa 169  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||  || | | | ||||||||||||||||||||||||||| | |||| |||||| ||    
T  43695205 aatattttttggggctaatttggttcgttatatttttttattaaacgtggtacattaaattaaatacaaaccaaaaagaaggagaattgataaaggacaa 43695106  T
Q  170 taaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    ||||||||| |||| |||  |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||    
T  43695105 taaaggaaa-taatgggtaataataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattgtagcttcagccagaatt 43695007  T
Q  269 attttt 274  Q
     |||||    
T  43695006 gttttt 43695001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 43342120 - 43342293
Alignment:
Q  60 tcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    ||||||||||||||||||||   |||||||||||||| ||||| |||| | |||||||||| ||| ||||||||||| ||||| |||||||||||| | |    
T  43342120 tcatgaccataaatatttttcaggggctaatttggtttgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaat 43342219  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||| |||||  ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  43342220 tgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 43342293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 37640601 - 37640777
Alignment:
Q  56 taactcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| ||||||   ||| |||||||||||||||| |||| |||||||||||  ||| ||||||||| |||||| ||||||||||||     
T  37640601 taactcatgaccataaacatttttcaggggttaatttggttcgttaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 37640700  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctag 229  Q
    | || | |||||  ||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||    
T  37640701 aatttataaagggcaataaaggaaaataatatgttgtgataatcaaaatataaaatttaatgtagaattgattctag 37640777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 7473772 - 7473569
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaattt 157  Q
    ||||||||||||| |||||| |||  ||||||||||||  ||| |||| |||||||||||  ||| ||||||||| |||||| ||||||||| || | ||    
T  7473772 tcatgaccataaacatttttcgggggctaatttggttcactaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaagagaatt 7473673  T
Q  158 gacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagct 256  Q
    || |||||| |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |  ||  |||||| ||||| || |||||    
T  7473672 gataaaggacaataaaagaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattcttggaaagccaaaagttaggatttgtagct 7473573  T
Q  257 tcaa 260  Q
    ||||    
T  7473572 tcaa 7473569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 35458051 - 35458201
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaa 179  Q
    |||||||||||||||||||| |||| | ||||||| || ||| ||||||||||| ||||| |||||||||||| | |||| |||||  ||||||| ||||    
T  35458051 gggctaatttggttcgttaagttttctaattaaatatgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaagaaaaa 35458150  T
Q  180 taataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  35458151 taataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 35458201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 19860505 - 19860305
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg--gctaatttggttcgttaaatttt-ttgattaaatttgcttcgtcaaattaaatacaaaccaaaaag 147  Q
    |||| |||||||| |||||||||||||| |||  ||||||||||||||||||||||  || || ||||         ||||||||||||||| ||||| |    
T  19860505 cttggtaactcataaccataaatattttctggaagctaatttggttcgttaaatttggttcatcaaat---------caaattaaatacaaagcaaaacg 19860415  T
Q  148 aaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtagg 246  Q
     || |   |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| || |    
T  19860414 gagaa---ttgataaaggacaataaaggaaaataataggttgtaataatcaaaatataaattttattggagaattgattatagttaactcaaaagttaag 19860318  T
Q  247 aattatagcttca 259  Q
    |||| || |||||    
T  19860317 aattgtaacttca 19860305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 17481014 - 17480896
Alignment:
Q  113 aatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaattt 210  Q
    |||||| ||| ||||||||||| ||||| ||||| |||||| | |||| |||||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  17481014 aatttggttcatcaaattaaattacaaagcaaaatgaaggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaattt 17480915  T
Q  211 aatggagaattgattctag 229  Q
    |||| ||||||||||||||    
T  17480914 aatgtagaattgattctag 17480896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 52 - 226
Target Start/End: Original strand, 32497046 - 32497222
Alignment:
Q  52 ttgataactcatgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||| ||||||||||| |||||| |||   |||||||||||||||| |||| |||||||||||| ||| ||||||||| |||||| || | | ||    
T  32497046 ttgacaactgatgaccataaacatttttcgggtaataatttggttcgttaagttttctgattaaatttgattcatcaaattaattacaaagcagagataa 32497145  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattc 226  Q
     || | |||| |||||  ||||||||||||||||||||| |||||||  |||||| |||||||||| |||||||||||    
T  32497146 tgagaattgataaagg-caataaaggaaaataataggttataataattcaaatataaaatttaatgtagaattgattc 32497222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 37996975 - 37996772
Alignment:
Q  56 taactcatgaccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    |||||||| | |||||| |||||||||  ||||||||| |||||||| ||||  ||||||||||| ||| |||||| || |||||| |||||| | |  |    
T  37996975 taactcattatcataaacattttttggaagctaatttgattcgttaagttttccgattaaatttggttcatcaaataaattacaaagcaaaaatatgaga 37996876  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
    ||| || | |||  |||||| |||||||||| |||||||||||||| |||| |||||||||| ||||||||||| ||  ||  |||||| |||||||| |    
T  37996875 att-gatacagggcaataaatgaaaataatatgttgtaataatcaagatataaaatttaatgtagaattgattcaaggaaagccaaaagttaggaattgt 37996777  T
Q  253 agctt 257  Q
    |||||    
T  37996776 agctt 37996772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 37551684 - 37551601
Alignment:
Q  186 gttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||    
T  37551684 gttgtaataatcaaaatacaaaatttattggagaattgattctagttaactcagaaactaggaattgtagcttcaaccagaatt 37551601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 3739002 - 3739092
Alignment:
Q  168 aataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctagttaactcaaaaggtaggaattatagctt 257  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||   || ||||||  |||||||| ||||||    
T  3739002 aataaagaaaaataataggttgtaataatcaaaatattaaatttaatgtagaattgattctaagaaagtcaaaaattaggaattgtagctt 3739092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 12015700 - 12015785
Alignment:
Q  60 tcatgaccataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaa 144  Q
    ||||||||||||||||||| || ||||||||| |||||| ||||||||| || ||||||| ||| | |||||||||||||| ||||    
T  12015700 tcatgaccataaatattttatgaggctaatttcgttcgtcaaattttttaatcaaatttggttcattaaattaaatacaaagcaaa 12015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 12015885 - 12015976
Alignment:
Q  170 taaaggaaaataataggttgtaataatcaaaatataaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaac 261  Q
    ||||| ||||||||  ||||||| || ||||||| ||| |||| | | ||||||||||| |||||||||||  | |||||||||||||||||    
T  12015885 taaagaaaaataatgagttgtaacaaccaaaatacaaaattaaagtaaaattgattctaattaactcaaaaatttggaattatagcttcaac 12015976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 51 - 259
Target Start/End: Complemental strand, 41512407 - 41512196
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| ||||||||| ||||||||||||| ||||  ||||||||||||||||| |||| |||||||||||| ||| ||||| |||||||||| ||||||||    
T  41512407 cttggtaactcatggccataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaactaaatacaaaacaaaaaga 41512308  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtagga 247  Q
    |||| | |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||| ||||||||||| |||||    
T  41512307 aggagaattgataaaggacaataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaaatgattatagctaactcaaaagttagga 41512208  T
Q  248 attatagcttca 259  Q
    ||| ||||||||    
T  41512207 attgtagcttca 41512196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 65 - 274
Target Start/End: Original strand, 31100317 - 31100527
Alignment:
Q  65 accataaatattttttgggct-aatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaa 163  Q
    ||||| ||||||||||||| | |||||| ||||||||||||||||||||||| || | | | ||||||||||||||||||||||||||| | |||| |||    
T  31100317 accatgaatattttttggggttaatttgattcgttaaattttttgattaaatgtggtacattaaattaaatacaaaccaaaaagaaggagaattgataaa 31100416  T
Q  164 ggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaacc 262  Q
    |||  |||||||||| |||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| ||    
T  31100417 ggaccataaaggaaa-taatgggtagtaataatcaaaatataaaatttaatggagaattgattctagttaactcaaaagctaggaattgtagcttcagcc 31100515  T
Q  263 agaattattttt 274  Q
    ||||||| ||||    
T  31100516 agaattactttt 31100527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 11829320 - 11829120
Alignment:
Q  67 cataaatattttttgggct-aatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaagg 165  Q
    |||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  ||||| ||   || |||| |||||    
T  11829320 cataaatattttatggggttaatttggttcgttaaattttttgattaaatttggttcctcaaattaaatacaaaaaaaaaataa---aaattgataaagg 11829224  T
Q  166 ataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccag 264  Q
    | |||||||||||||||| |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  11829223 acaataaaggaaaataatgggttgtaataactaaaatataaaatttaatggagaattgattctagttaactcaaaagttaggaattataccttcatccag 11829124  T
Q  265 aatt 268  Q
    ||||    
T  11829123 aatt 11829120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 1762474 - 1762261
Alignment:
Q  56 taactcatgaccataaatattttttg-ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaa 154  Q
    |||||||||||| ||||||||||  | |||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||||||| |    
T  1762474 taactcatgacc-taaatattttccgaggctaatttggttcgttaaattttttgatacaatttggttcatcaaattaaatacaaaccaaaaagaaggaga 1762376  T
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattata 253  Q
     |||| |||||| ||||||||||||||||  | ||||| ||| ||| ||| ||||||||| |||||||||||||||| |||| ||||| |||||||| ||    
T  1762375 attgataaaggacaataaaggaaaataatgagctgtaaaaattaaattataaaatttaatagagaattgattctagtaaacttaaaagttaggaattgta 1762276  T
Q  254 gcttcaaccagaatt 268  Q
    |||||||||||||||    
T  1762275 gcttcaaccagaatt 1762261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 82 - 275
Target Start/End: Complemental strand, 24075752 - 24075558
Alignment:
Q  82 ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaata 181  Q
    ||||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||| |||||||||  | | |||| |||||  |||||| |||||||    
T  24075752 ggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaaatagaattgataaagggcaataaatgaaaata 24075653  T
Q  182 ataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattatttttg 275  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||| |||||| | ||||||||| |||||    
T  24075652 ataggttgtaataatcaaaatataaaatttattggagaattgattctagttaaatcaaaagttaggaattgtagctttatccagaattacttttg 24075558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 46033512 - 46033705
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| |||||||||||  |||||||||||||||  ||||||||||| ||| | |||| |||||||||||| ||| ||||||||| |||||| ||||||||    
T  46033512 cttggtaactcatgacagtaaatattttttgggggctaatttggtttgttgagttttctgattaaatttggttcatcaaattaattacaaagcaaaaaga 46033611  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatata-aatttaatggagaattgattctagttaactcaaaag 241  Q
    |||| | |||| ||||   ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||    
T  46033612 aggagaattgataaagagcaataaaggaaaataatatgttgtaataatcaaaatatacaatttattggagaattgattctaattaactcaaaag 46033705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 82 - 274
Target Start/End: Complemental strand, 27416794 - 27416602
Alignment:
Q  82 ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaata 181  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||||| |||||| |||||||||||| | |||| |||||  ||||||||||||||    
T  27416794 ggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 27416695  T
Q  182 ataggttgtaataatcaaa-atataaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattattttt 274  Q
    |||| |||||||||||||| ||| ||| ||| ||||||||||||| |||||||| |||||  || ||||| || ||| ||||||||||||||||    
T  27416694 atagattgtaataatcaaatata-aaagttattggagaattgattatagttaacccaaaaactaagaattgtaacttaaaccagaattattttt 27416602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 259
Target Start/End: Original strand, 42137541 - 42137747
Alignment:
Q  56 taactcatgaccataaatattttttgggc--taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||||||||| ||||   ||| |||||||||||| |||| |||||||||||| ||  ||| |||||||||||| ||||||||||||     
T  42137541 taactcatgaccataaatattttatgggggttaagttggttcgttaagttttctgattaaatttggtttatcagattaaatacaaagcaaaaagaaggag 42137640  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
    | |||| | |    |||||| |||||||||| ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| |||||||| |    
T  42137641 aattgatacaaagcaataaatgaaaataataagttgtaataataaaaatataaaatttattggagaattgattctagttaactcaaaagctaggaattgt 42137740  T
Q  253 agcttca 259  Q
    || ||||    
T  42137741 agattca 42137747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 47655731 - 47655904
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    |||||||||||||||||||| |||  ||||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| ||||||||| || | |    
T  47655731 tcatgaccataaatatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaat 47655830  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||| |||||  ||||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||    
T  47655831 tgataaagggcaataaaggaaaataataggttgtaatagtcaaaatagaaaatttaatgtagaattgattctag 47655904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 13509784 - 13509956
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    ||||||||||||| |||||| |||  ||||||||||||||| | |||| | |||||||||| ||| |||| |||||| ||||| ||||||||||||||||    
T  13509784 tcatgaccataaacatttttcgggggctaatttggttcgttcagttttgtaattaaatttggttcatcaagttaaattacaaagcaaaaagaaggaaatt 13509883  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
     || |||||  ||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  13509884 -gataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 13509956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 44740403 - 44740228
Alignment:
Q  56 taactcatgaccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||| |||||||||||| ||  |||||||||||||||||| |||| |||||||||||| ||| |||| |||| |||||| |||| |||||||     
T  44740403 taactcatgacaataaatatttttcggaggctaatttggttcgttaagttttctgattaaatttggttcatcaagttaattacaaagcaaacagaaggag 44740304  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattcta 228  Q
    | |||| |||||  || | |||||||||||||||||||||||| ||||||| |||||||| | |||||||||||||    
T  44740303 aattgataaagggcaaaataggaaaataataggttgtaataatgaaaatataaaatttaacgtagaattgattcta 44740228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 50031084 - 50030910
Alignment:
Q  60 tcatgaccataaatattttttggg---ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaat 155  Q
    ||||||||||||| ||||||| ||   ||||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| |||||||||||| |     
T  50031084 tcatgaccataaacatttttttggacgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaa 50030985  T
Q  156 ttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    |||| |||||  ||||||||||||||||||||||||||||||||||||  |||||||||| || |||||| ||||    
T  50030984 ttgataaagggcaataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtaggattgatcctag 50030910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 11051104 - 11051224
Alignment:
Q  156 ttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatag 254  Q
    |||| ||||| ||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| || |||||| |||||||| |||    
T  11051104 ttgataaagggtaataaaggaaaataataatttgtaataatcaaaatataaaatttaatggagaattgattctagtttacccaaaagttaggaattgtag 11051203  T
Q  255 cttcaaccagaattatttttg 275  Q
     |||||||| |||| ||||||    
T  11051204 attcaaccataattgtttttg 11051224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 51 - 225
Target Start/End: Complemental strand, 45179593 - 45179418
Alignment:
Q  51 cttgataactcatgaccataaatatttttt-gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||| |||||||||||||||||| | |||||||||||||||||  | ||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  45179593 cttggtaacccatgaccataaatattttgtagggctaatttggttcgtagatttttttgattaaatttgattcatcaaattaaatacaaatcaaaaagaa 45179494  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgatt 225  Q
     || | ||||  ||||| || ||||||||||||  |||| ||||||| ||||||| |||||| || |||||||||||    
T  45179493 -gataattgatgaaggacaacaaaggaaaataacgggttctaataattaaaatataaaatttgattgagaattgatt 45179418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 259
Target Start/End: Original strand, 3850797 - 3850911
Alignment:
Q  146 agaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggta 244  Q
    ||||||| | |||| |||||  ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||    
T  3850797 agaaggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttattggagaattgattctagataactcaaaagcta 3850896  T
Q  245 ggaattatagcttca 259  Q
    | |||| ||||||||    
T  3850897 gaaattgtagcttca 3850911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 27067392 - 27067246
Alignment:
Q  56 taactcatgaccataaatattttttgggct-aatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaa 154  Q
    |||||| ||||||||||||| |||| || | |||||| |||||||| |||||| |||||||||| ||| |||||||||||||||| |||| ||||||| |    
T  27067392 taactcctgaccataaatatcttttaggtttaatttgattcgttaattttttttattaaatttggttcatcaaattaaatacaaatcaaagagaaggaga 27067293  T
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaa 201  Q
     |||| |||||| |||||||||||||||| | |||||||||| ||||    
T  27067292 attgataaaggacaataaaggaaaataatggattgtaataattaaaa 27067246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 11050940 - 11051108
Alignment:
Q  56 taactcatgaccataaatattttttg--ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    |||||||| ||||||||||||||| |  |||||||||| | | |||| |||||||| |||||||| ||| ||||||||| |||||| |||| || || |     
T  11050940 taactcattaccataaatatttttcgagggctaatttgatccattaatttttttgaataaatttggttcatcaaattaattacaaagcaaagaggagaa- 11051038  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgat 224  Q
      |||| ||||| ||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||    
T  11051039 --ttgataaagggtaataaaggaaaataataatttataataatcaaaatataaaatttaatggagaattgat 11051108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 58 - 275
Target Start/End: Complemental strand, 49430888 - 49430669
Alignment:
Q  58 actcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaag--gaa 153  Q
    |||||||||||||||||||||| | |  ||  ||||||||||||| ||||||||||||||||| ||| | ||||||| |||||| ||||||||||  |||    
T  49430888 actcatgaccataaatatttttcgagagctggtttggttcgttaagttttttgattaaatttggttcattaaattaattacaaagcaaaaagaagaagaa 49430789  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattat 252  Q
    || |   |||||  |||||| ||||||||||  |||||||||| ||||||| ||||||| ||||||||||| |||| ||||  |||||| ||  |||| |    
T  49430788 atgt---aaagggcaataaaagaaaataataaattgtaataataaaaatataaaatttattggagaattgaatctaattaatccaaaagctataaattgt 49430692  T
Q  253 agcttcaaccagaattatttttg 275  Q
    || |||| ||| |||| ||||||    
T  49430691 agtttcatccaaaattgtttttg 49430669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 6706384 - 6706214
Alignment:
Q  60 tcatgaccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    ||||||||||||| |||||| ||  |||||||||||||||||| |||| | |||||||||| ||| ||||||||||| | ||  ||||||| || |   |    
T  6706384 tcatgaccataaacatttttcggaggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattataattcaaaaaggagaa---t 6706288  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    ||| |||||  |||||||||||||||||||||||||||||  |||||  |||||||||| ||||||||||||||    
T  6706287 tgataaagggcaataaaggaaaataataggttgtaataattgaaatagaaaatttaatgtagaattgattctag 6706214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 203
Target Start/End: Original strand, 4485028 - 4485170
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaattt 157  Q
    |||||||||||||||||||| |||  |||||| | |||||||| |||| | |||||||||| ||| ||||||||| |||||| |||||||   || | ||    
T  4485028 tcatgaccataaatatttttcgggggctaattagtttcgttaagttttctaattaaatttggttcatcaaattaattacaaagcaaaaag---gataatt 4485124  T
Q  158 gacaaaggataataaaggaaaataataggttgtaataatcaaaata 203  Q
    || |||||  ||||||| |||||||||||| |||||||||||||||    
T  4485125 gataaagggcaataaagaaaaataataggtcgtaataatcaaaata 4485170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 20473665 - 20473736
Alignment:
Q  75 ttttttgggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaa 146  Q
    ||||| ||||||||||||||| | ||| |||||||| ||||||| ||| |||||||||||||||| ||||||    
T  20473665 tttttggggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20473736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 20557888 - 20557817
Alignment:
Q  75 ttttttgggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaa 146  Q
    ||||| ||||||||||||||| | ||| |||||||| ||||||| ||| |||||||||||||||| ||||||    
T  20557888 tttttggggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20557817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 27065144 - 27065077
Alignment:
Q  193 taatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttca 259  Q
    |||| |||||||||| |||||||||||||||||| ||||||||||||||  |||||||| ||||||||    
T  27065144 taattaaaatataaaatttaatggagaattgattttagttaactcaaaaactaggaattgtagcttca 27065077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 7385368 - 7385307
Alignment:
Q  169 ataaaggaaaataataggttgtaataatcaaaat-ataaatttaatggagaattgattctag 229  Q
    |||||| ||||||||||||||||||||||||||| | |||||||||| | ||||||||||||    
T  7385368 ataaagtaaaataataggttgtaataatcaaaataaaaaatttaatgtaaaattgattctag 7385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 20364594 - 20364659
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaa 146  Q
    ||||||||||||||| | ||| |||||||| ||||||| ||| |||||||||||||||| ||||||    
T  20364594 gggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20364659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 20546317 - 20546252
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaa 146  Q
    ||||||||||||||| | ||| |||||||| ||||||| ||| |||||||||||||||| ||||||    
T  20546317 gggctaatttggttcatcaaaatttttgatcaaatttggttcatcaaattaaatacaaagcaaaaa 20546252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 28883940 - 28883733
Alignment:
Q  63 tgaccataaatattttttggg-ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgaca 161  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || | | | ||||||||||||||| ||||||||||| | |||| |    
T  28883940 tgaccataaatattttttggggctaatttggttcgttaaatattttgattaaatgtggtacattaaattaaatacaaactaaaaagaaggagaattgata 28883841  T
Q  162 aaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaa 260  Q
    |||||  ||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||| || ||||| ||||||||     
T  28883840 aaggacgataaaggaaaataatgggtaataataatcaaaatataaaatttaatggagaattgattctatttaactcaaaagctaagaattgtagcttcag 28883741  T
Q  261 ccagaatt 268  Q
     |||||||    
T  28883740 tcagaatt 28883733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 51 - 268
Target Start/End: Complemental strand, 44328915 - 44328702
Alignment:
Q  51 cttgataactcatgaccataaatatttttt-gggctaatttggttcgttaaattttttg-attaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| |||||| |||||||||||||||||| |||||||||||||||||||  ||||||  |||||||||| ||  |||||||||||||||||||||||||    
T  44328915 cttggtaactcctgaccataaatatttttttgggctaatttggttcgttactttttttttattaaatttggtttatcaaattaaatacaaaccaaaaaga 44328816  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaatttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
    | || | |||| |||||||||||||||||||||||  |||||||| || ||||||      |||||||||||||||||||||||||||||||| ||||||    
T  44328815 atgagaattgataaaggataataaaggaaaataatgagttgtaatgattaaaata------taatggagaattgattctagttaactcaaaagctaggaa 44328722  T
Q  249 ttatagcttcaaccagaatt 268  Q
    || |||||||| ||| ||||    
T  44328721 ttgtagcttcagccaaaatt 44328702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 51 - 275
Target Start/End: Original strand, 50392656 - 50392882
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| |||||||| |||||||||||||| ||||  ||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||| ||||||||    
T  50392656 cttggtaactcat-accataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaaacaaaaaga 50392754  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtagga 247  Q
    |||| |  ||| ||||   ||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||| ||||||| ||||| ||||| |||||    
T  50392755 aggagaaatgataaagagcaataaaggaaaataataggttgtaataataaaaatataaaatttattagagaatttattctagctaacttaaaagctagga 50392854  T
Q  248 attatagcttcaaccagaattatttttg 275  Q
    ||| ||| |||| ||||||||| |||||    
T  50392855 attgtagtttcatccagaattacttttg 50392882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 51 - 207
Target Start/End: Complemental strand, 30810971 - 30810813
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| ||||||||||||||||||||||| ||||  ||||||||||||||||| |||| |||||||||||| ||| |||||||||||||||| ||||||||    
T  30810971 cttggtaactcatgaccataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaaga 30810872  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa 207  Q
    |||| | |||| |||||  ||||||||||||||||||||||||||||||||||||||||    
T  30810871 aggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaa 30810813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 44610663 - 44610879
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg-gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    |||| |||||||| |||||||||||||| ||| ||||||||| ||||||| |||||| ||||||||||| ||| |||||||||||||||| | |||||||    
T  44610663 cttggtaactcat-accataaatattttatggagctaatttgattcgttagattttt-gattaaatttggttcatcaaattaaatacaaatcgaaaagaa 44610760  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
    |||   |||| |||||| ||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||| ||| ||    
T  44610761 ggagcattgataaaggacaataaagaaaaataat-ggttgtaataattaaaatataaaatttaatggagaattgattctaataaactcaaaagctagaaa 44610859  T
Q  249 ttatagcttcaaccagaatt 268  Q
    || |||||||||||||||||    
T  44610860 ttgtagcttcaaccagaatt 44610879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 52 - 260
Target Start/End: Complemental strand, 11263953 - 11263742
Alignment:
Q  52 ttgataactcatgaccataaatattttttg--ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    ||||||||||||||||||||| |||||| |  |||||||||||||| |||| |||| ||||| |||||  ||| ||||||||| |||||| |||||||||    
T  11263953 ttgataactcatgaccataaacatttttcgagggctaatttggttcattaagttttctgattgaattttgttcatcaaattaattacaaagcaaaaagaa 11263854  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
    ||| | |||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||  ||  |||||| |||||     
T  11263853 ggagaattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatctagaattgattctaggaaagccaaaagctaggat 11263754  T
Q  249 ttatagcttcaa 260  Q
    || |||||||||    
T  11263753 ttgtagcttcaa 11263742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 57 - 257
Target Start/End: Complemental strand, 28182627 - 28182424
Alignment:
Q  57 aactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaa 154  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||| | || |||||||||||| ||| ||||||||| |||||| |||||||||||| |    
T  28182627 aactcatgaccataaatatttttcgggggctaatttggttcgttaagtcttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggaga 28182528  T
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattata 253  Q
      ||| |||||  |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||  ||  |||||| |||||||| ||    
T  28182527 actgataaagggcaataaaagaaaataataggttgtaataatcaaaatataaaatttaatgtagaattgattataggaaagccaaaagttaggaatttta 28182428  T
Q  254 gctt 257  Q
    ||||    
T  28182427 gctt 28182424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 45150852 - 45150649
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaattt 157  Q
    ||||||||||||| |||||| |||  |||||||||||| |||| |||| |||||||||||  ||| ||||||||| |||||| |||||||||||| | ||    
T  45150852 tcatgaccataaacatttttcgggggctaatttggttcattaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggagaatt 45150753  T
Q  158 gacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagct 256  Q
    || |||||  ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||  ||  |||||| ||||| || |||||    
T  45150752 gataaagggcaataaaggaaaataataggttgtaacaatcaaaatataaaatttaatgtagaattgattctaggaaaaccaaaagctaggatttgtagct 45150653  T
Q  257 tcaa 260  Q
    ||||    
T  45150652 tcaa 45150649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 81 - 268
Target Start/End: Complemental strand, 51407695 - 51407507
Alignment:
Q  81 gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaat 180  Q
    ||||||||||| ||||||||||||| |||||||||| | ||| ||||||||| |||||| |||||||||||| | |||| |||||  |||||||||||||    
T  51407695 gggctaatttgtttcgttaaattttctgattaaattcggttcatcaaattaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 51407596  T
Q  181 aataggttgtaataatcaaaatataa-atttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    |||| ||||||||||| ||||||||| ||||| ||||||||||||| ||||||||  ||||  ||| |||| |||||||||||| ||||    
T  51407595 aataagttgtaataattaaaatataatatttattggagaattgattttagttaaccaaaaaactagaaattgtagcttcaaccaaaatt 51407507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 45488943 - 45489166
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaat-----taaatacaaaccaa 143  Q
    |||| |||||||| |||||||||||||| |||  | ||||||||||||||||||||| |  ||||||||| ||| ||||||     |||||||||| |||    
T  45488943 cttggtaactcataaccataaatattttctggaggttaatttggttcgttaaattttctagttaaatttggttcatcaaatcaaattaaatacaaagcaa 45489042  T
Q  144 aaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaagg 242  Q
    |||  ||||   |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| ||||     
T  45489043 aaa--aggaggattgataaaggacaataaaggaaaataataggttgtaataatcaaaatataaattttattggaaaattgattctagttaactccaaagt 45489140  T
Q  243 taggaattatagcttcaaccagaatt 268  Q
    |||||||| |||||||| | ||||||    
T  45489141 taggaattgtagcttcacctagaatt 45489166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 52 - 275
Target Start/End: Complemental strand, 51229989 - 51229763
Alignment:
Q  52 ttgataactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaa 149  Q
    ||||||||||||||| |||||  ||||| |||  ||||||||||  ||||| |||| | |||||||||| ||| ||||||||| |||||| |||||||||    
T  51229989 ttgataactcatgacgataaacttttttcgggggctaatttggtcggttaagttttcttattaaatttgattcatcaaattaattacaaagcaaaaagaa 51229890  T
Q  150 ggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctagttaactcaaaaggtaggaa 248  Q
    ||| | |||| |||||   ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||  ||  |||||| ||||||    
T  51229889 ggagaattgataaagggatataaaagaaaataataggttgtaataatcaaaatattaaatttaatgtagaattgattctaggaaagccaaaagttaggaa 51229790  T
Q  249 ttatagcttcaaccagaattatttttg 275  Q
    || |||||| ||  |||||||||||||    
T  51229789 ttgtagctttaaggagaattatttttg 51229763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 96 - 275
Target Start/End: Complemental strand, 42074608 - 42074428
Alignment:
Q  96 gttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataa 195  Q
    ||||| |||| |||||||||||| ||| ||||||||| |||||| |||||||||||| | |||  |||||  ||||||||||||||||||||||||||||    
T  42074608 gttaagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggagaattggtaaagggcaataaaggaaaataataggttgtaataa 42074509  T
Q  196 tcaaaata-taaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattatttttg 275  Q
    |||||||| ||||||||||| ||||||||||| ||  || ||||||| |||||||| |||||| ||  |||||| ||||||    
T  42074508 tcaaaatattaaatttaatgtagaattgattcgagcaaagtcaaaagctaggaattgtagctttaaggagaattgtttttg 42074428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 48181328 - 48181130
Alignment:
Q  56 taactcatgaccataaatatttttt---gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaagga 152  Q
    ||||||||||||||||| |||||||   |||||||||||| ||||||| |||| |||||||||||| ||| | ||||||| |||||| |||||||||| |    
T  48181328 taactcatgaccataaacattttttcgggggctaatttggctcgttaagttttctgattaaatttggttcatgaaattaattacaaagcaaaaagaagaa 48181229  T
Q  153 aatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctagttaactcaaaaggtaggaatt 250  Q
     | || | |||||  ||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||||||||||  ||  |||||| ||||||||    
T  48181228 gaatttataaagggcaataaagaaaaataataggttgcaataatcaaaatataaaatttaatgtagaattgattctaggaaagccaaaagctaggaatt 48181130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 60 - 228
Target Start/End: Complemental strand, 39251731 - 39251559
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    ||||||||||||| |||||| |||  ||||||||||||||||| |||| | |||||||||| ||| ||||||||||| || ||||||||||||||| | |    
T  39251731 tcatgaccataaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattaccaaccaaaaagaaggagaat 39251632  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattcta 228  Q
    ||| |||||  ||||||| ||||||||| ||||||||||||||||||  |||||||||| |||||||||||||    
T  39251631 tgataaagggcaataaagaaaaataatatgttgtaataatcaaaatagaaaatttaatgtagaattgattcta 39251559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 51 - 268
Target Start/End: Original strand, 53687212 - 53687432
Alignment:
Q  51 cttgataactcatgaccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    ||||||||||||||| |||||| |||||||||  |||||||||||| ||||| |||| | ||| ||||||  || ||||||||| |||||| ||||| ||    
T  53687212 cttgataactcatgatcataaacattttttggaggctaatttggttggttaagttttcttatttaatttggctcatcaaattaattacaaagcaaaatga 53687311  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctagttaactcaaaaggtagga 247  Q
    |||| | |||| |||||  ||||||| |||||||||||||||||||||||||||| |||||||| || |||||||||| |||  ||  |||||  |||||    
T  53687312 aggagaattgataaagggcaataaagaaaaataataggttgtaataatcaaaatattaaatttagtgtagaattgattttagaaaagccaaaacctagga 53687411  T
Q  248 attatagcttcaaccagaatt 268  Q
    ||| |||||| ||| ||||||    
T  53687412 attgtagctttaacaagaatt 53687432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 42274775 - 42274601
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||| ||||| |||||| |||  ||||||||||||| ||| |||| |||| ||||||| ||| ||||||||| ||||||  ||||||||||||    
T  42274775 taactcatgactataaacatttttcgggggctaatttggttcgataagttttctgatcaaatttggttcatcaaattaattacaaaggaaaaagaaggaa 42274676  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaatttaatggagaattgattcta 228  Q
    | |||| || ||  |||||||||||||||||| |||| |||| |||| || |||||||||| |||||||||||||    
T  42274675 aattgataacgggcaataaaggaaaataatagattgttataaccaaattaaaaatttaatgtagaattgattcta 42274601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 48254339 - 48254520
Alignment:
Q  52 ttgataactcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaaga 148  Q
    ||||||| ||||||||||||| ||||||   ||||||||||  ||| |||| |||| | |||||||||| ||| ||||||||||| ||||| ||||||||    
T  48254339 ttgataagtcatgaccataaacatttttcaagggctaatttaattccttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 48254438  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    | || | |||| |||||  ||||||| ||||||||||||||||||||||||||||  |||||||||  ||||||||||||||    
T  48254439 aagagaattgataaagggcaataaagaaaaataataggttgtaataatcaaaatagaaaatttaatatagaattgattctag 48254520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 33025686 - 33025842
Alignment:
Q  102 ttttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaa 201  Q
    |||| |||||||||||| ||| || |||||| |||||| |||||||||||| | |||| ||||| || |||||||||||||||| |||||||||| ||||    
T  33025686 ttttctgattaaatttggttcatcgaattaattacaaagcaaaaagaaggagaattgataaagggtagtaaaggaaaataatagtttgtaataattaaaa 33025785  T
Q  202 ta-taaatttaatggagaattgattctagttaactcaaaaggtaggaattatagctt 257  Q
    || ||||||| ||| |||||||||| |||  ||  |||||| |||||||| ||||||    
T  33025786 tattaaattttatgtagaattgattataggaaagccaaaagctaggaattgtagctt 33025842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 40237442 - 40237342
Alignment:
Q  169 ataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaat 267  Q
    ||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||| |||||||| || ||||| ||| |||    
T  40237442 ataaaggaaaataatggattgtaataatcaaaatataaaatttgatggagaattgattctagttaatttaaaagttaggaattgtaacttcatccaaaat 40237343  T
Q  268 t 268  Q
    |    
T  40237342 t 40237342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 30809915 - 30809852
Alignment:
Q  205 aaatttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||    
T  30809915 aaatttattggagaattgattctagctaactcaaaagctaggaattgtagcttcatccagaatt 30809852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 56 - 268
Target Start/End: Complemental strand, 30134400 - 30134190
Alignment:
Q  56 taactcatgaccataaatatttt-ttgggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaa 154  Q
    |||||||| ||||| |||||||| |||||||||||||||  ||||| ||||||||||||||||| ||  ||||||||||||||||| ||||    ||| |    
T  30134400 taactcataaccatcaatattttcttgggctaatttggtatgttaacttttttgattaaatttggtttatcaaattaaatacaaacaaaaa----ggata 30134305  T
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattata 253  Q
     ||||  ||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||| ||| |||| ||    
T  30134304 attgatgaaggacaataaaggaaaataataggttgtaataattaaaatataaaatttaatggagaattgattctggttaactcaaaagctagaaattgta 30134205  T
Q  254 gcttcaaccagaatt 268  Q
    |||||||||||||||    
T  30134204 gcttcaaccagaatt 30134190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 66 - 268
Target Start/End: Original strand, 20838345 - 20838550
Alignment:
Q  66 ccataaatattttttgg--gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaatttgacaaa 163  Q
    ||||||||||||| |||  | |||||| ||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||| |  | |||| |||    
T  20838345 ccataaatattttatggaggttaatttagttcgttaagttttttgattaaatttggttcatcaaattaaatacaaagcaaaaagaatgtgaattgataaa 20838444  T
Q  164 ggataataaaggaaaataataggttgtaataatcaaaatataa-atttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaacc 262  Q
    |   ||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||| |||| |||||||||| ||||| || |||||||||||    
T  20838445 gagcaataaaggaaactaataggtcgtaataatcaaaatataagatttattggagaattgattatagtaaactcaaaagttaggatttgtagcttcaacc 20838544  T
Q  263 agaatt 268  Q
    ||||||    
T  20838545 agaatt 20838550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 4146968 - 4146855
Alignment:
Q  155 tttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaatttaatggagaattgattctagttaactcaaaaggtaggaattatag 254  Q
    ||||| |||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||    
T  4146968 tttgataaaggacaataaaggaaaataatgggttgtaataatcaaaatataaaattaatggagaattgattctagttaactcaaaagctaggaattgtag 4146869  T
Q  255 cttcaaccagaatt 268  Q
    ||||| ||||||||    
T  4146868 cttcatccagaatt 4146855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 51 - 192
Target Start/End: Complemental strand, 27825262 - 27825119
Alignment:
Q  51 cttgataactcatgaccataaatattttttg-ggctaatttggttcgttaaattttttg-attaaatttgcttcgtcaaattaaatacaaaccaaaaaga 148  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||    
T  27825262 cttggtaactcctgaccataaatattttttgtggctaatttggttcgttaaattttttggattaaatttggttcatcaaattaaatacaaacgaaaaaga 27825163  T
Q  149 aggaaatttgacaaaggataataaaggaaaataataggttgtaa 192  Q
    |||| | |||| |||| | |||||||||||||||| ||||||||    
T  27825162 aggagaattgataaagaacaataaaggaaaataatgggttgtaa 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 10683310 - 10683249
Alignment:
Q  169 ataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  10683310 ataaaggaaaataataggttgtaataatcaaaatagaaaatttaatgtagaattgattctag 10683249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 4147062 - 4146994
Alignment:
Q  51 cttgataactcatgaccataaatattttttggg-ctaatttggttcgttaaattttttgattaaatttg 118  Q
    |||| ||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  4147062 cttggtaactcatgtccgtaaatattttatggggctaatttggttcgttaaattttttgattaaatttg 4146994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 27825119 - 27825067
Alignment:
Q  216 agaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaatt 268  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||| ||||    
T  27825119 agaattgattctagttaactgaaaagttaggaattgtagcttcaaccataatt 27825067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Complemental strand, 10683382 - 10683333
Alignment:
Q  85 taatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat 134  Q
    |||||||||| |||||||||| | |||||||||| ||| |||||||||||    
T  10683382 taatttggtttgttaaattttctaattaaatttggttcatcaaattaaat 10683333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 32902 - 33078
Alignment:
Q  56 taactcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    |||||||||||||||||||||||| |||  || |||||||||||||  |||| |||||||||||  ||| ||||||||| |||||| ||||||||||||     
T  32902 taactcatgaccataaatatttttcgggggctgatttggttcgttaggttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggat 33001  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatat-aaatttaatggagaattgattctag 229  Q
    | |||| |||||  ||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  33002 aattgataaagggcaataaaggaaaataataggttgtaataatcaaaatataaaatttaatttagaattgattctag 33078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 126 - 275
Target Start/End: Original strand, 9606 - 9756
Alignment:
Q  126 aaattaaatacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgat 224  Q
    ||||||||||| || |||||||||||| | |||| |||||  ||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  9606 aaattaaatacgaagcaaaaagaaggagaattgataaagggcaataaagaaaaataatagattgtaataatcaaaatataaaatttattggagaattgat 9705  T
Q  225 tctagttaactcaaaaggtaggaattatagcttcaaccagaattatttttg 275  Q
    ||||| ||||||||||| |||||||| |||||||| |||||||| ||||||    
T  9706 tctagctaactcaaaagttaggaattgtagcttcatccagaattgtttttg 9756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 60 - 207
Target Start/End: Complemental strand, 91790 - 91641
Alignment:
Q  60 tcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaaattt 157  Q
    ||||||||||||| | |||||  ||||| ||||||||||||||||||| ||| |||||||| ||| ||||||||| |||||| |||||||||||| | ||    
T  91790 tcatgaccataaacactttttcggggctgatttggttcgttaaattttctgaataaatttggttcatcaaattaattacaaagcaaaaagaaggagaatt 91691  T
Q  158 gacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa 207  Q
    || ||| || ||||||||||||||||||||||||||||||||||||||||    
T  91690 gataaaagacaataaaggaaaataataggttgtaataatcaaaatataaa 91641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 37926 - 37777
Alignment:
Q  82 ggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaat 180  Q
    ||||||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| |||||||||||| | |||| |||||  |||||||||||||    
T  37926 ggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaaacaaaaagaaggagaattgataaagggcaataaaggaaaat 37827  T
Q  181 aataggttgtaataatcaaaata-taaatttaatggagaattgattctag 229  Q
    |||||||||||||||||||||||  |||||||||  ||||||||||||||    
T  37826 aataggttgtaataatcaaaatagaaaatttaatttagaattgattctag 37777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 4342 - 4176
Alignment:
Q  60 tcatgaccataaatattttttggg--ctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaat-acaaaccaaaaagaaggaaatt 156  Q
    ||||||||||||| |||||| |||  ||||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||  ||||||| || |   |    
T  4342 tcatgaccataaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaattcaaaaaggagaa---t 4246  T
Q  157 tgacaaaggataataaaggaaaataataggttgtaataatcaaaata-taaatttaatggagaattgatt 225  Q
    ||| |||||  ||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||||||    
T  4245 tgataaagggcaataaaggaaaataataggttgtaataataaaaatagaaaatttaatgtagaattgatt 4176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 17069 - 16920
Alignment:
Q  56 taactcatgaccataaatatttttt--gggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaaggaa 153  Q
    ||||||||||||||||| | |||||  |||||||||||||||||||| |||  | | |||||||| ||| ||||||||| |||||  ||||||||||||     
T  17069 taactcatgaccataaacactttttcggggctaatttggttcgttaagtttcctaaataaatttggttcatcaaattaattacaacgcaaaaagaaggag 16970  T
Q  154 atttgacaaaggataataaaggaaaataataggttgtaataatcaaaatataaa 207  Q
    | |||| ||| || ||||||||    ||||||||||||||||||||||||||||    
T  16969 aattgataaaagacaataaagg----taataggttgtaataatcaaaatataaa 16920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 4524 - 4626
Alignment:
Q  174 ggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattattt 272  Q
    ||||||||||  ||| |||||| ||||||| ||| ||||||| | |||||||| ||||||||||||||| |||||||| ||||||||| |||||||| ||    
T  4524 ggaaaataatgagttataataaccaaaatagaaaatttaatgcataattgattgtagttaactcaaaagctaggaattgtagcttcaatcagaattactt 4623  T
Q  273 ttg 275  Q
    |||    
T  4624 ttg 4626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 3574 - 3472
Alignment:
Q  174 ggaaaataataggttgtaataatcaaaatataaa-tttaatggagaattgattctagttaactcaaaaggtaggaattatagcttcaaccagaattattt 272  Q
    ||||||||||  ||| |||||| ||||||| ||| ||||||| | |||||||| ||||||||||||||| |||||||| ||||||||| |||||||| ||    
T  3574 ggaaaataatgagttataataaccaaaatagaaaatttaatgcataattgattgtagttaactcaaaagctaggaattgtagcttcaatcagaattactt 3475  T
Q  273 ttg 275  Q
    |||    
T  3474 ttg 3472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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