View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_low_14 (Length: 324)
Name: NF20395_low_14
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 83 - 303
Target Start/End: Complemental strand, 33686925 - 33686705
Alignment:
| Q |
83 |
cctttctctacctataaaaacctccaacaactttctaaattatgatgattcaaaaaatgtcactacccctcacctttaaactcaatcgcacaaaccactc |
182 |
Q |
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| T |
33686925 |
cctttctccacctataaaaatctccaacaactttctaaattatgatgattcaaaaaatgtcactacccctcacctttaaattcaatcgcacaaaccactc |
33686826 |
T |
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| Q |
183 |
acacagcttaaccaatgaccatatccattctttaatctcttcttctcctgacattcgcaagtcacaccatatcattctcttcttccttaatccagtggcg |
282 |
Q |
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| T |
33686825 |
acacagctcaaccaataaccatatccattttttaatctcttcttctcttgacattcgcaagtcacaccatatcattctcttcttccttaatccagtgacg |
33686726 |
T |
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| Q |
283 |
gagccaagaaatttatggagt |
303 |
Q |
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|||| | ||||||||||||| |
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| T |
33686725 |
gagctagaaaatttatggagt |
33686705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 33687871 - 33687835
Alignment:
| Q |
12 |
catagggacaaatacaaactacaaggacgagttttag |
48 |
Q |
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| T |
33687871 |
catagggacaaataccaactacaaggacgagttttag |
33687835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 15209282 - 15209310
Alignment:
| Q |
274 |
ccagtggcggagccaagaaatttatggag |
302 |
Q |
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| T |
15209282 |
ccagtggcggagccaagaaatttatggag |
15209310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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