View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20395_low_18 (Length: 277)
Name: NF20395_low_18
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 43278513 - 43278767
Alignment:
| Q |
17 |
attaacagtattgtattttttacgctattaaagatttatttcaaaacaaacgtaaaacattcacaaaagttagatttctaataaaatattcatttcttca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43278513 |
attaacagtattgtattttttacgctattaaagatttatttcaaaacaaacgtaaaacattcacaaaagttagatttctaataaaatattcatttcttca |
43278612 |
T |
|
| Q |
117 |
acatatcaacatagtggaaataaaattaaaatacattgtcggtaaaatgtcggaaagacaacatttttgtaacatataagatattaataaagaaaaggag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43278613 |
acatatcaacatagtggaaataaaattaaaatacattgtcggtaaaatgtcggaaagacaacatttttgtaacatataagatattaataaagaaaaggag |
43278712 |
T |
|
| Q |
217 |
tgacatagagatcccatctactatttttgtttacttcagttttttatagatttat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43278713 |
tgacatagagatcccatctactatttttgtttacttcagttttttatagatttat |
43278767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 38896937 - 38896882
Alignment:
| Q |
186 |
taacatataagatattaataaagaaaag--gagtgacatagagatcccatctacta |
239 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
38896937 |
taacatataagatattaataaagaaaaggagagtggcatagagatcccatctacta |
38896882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 5834687 - 5834651
Alignment:
| Q |
235 |
tactatttttgtttacttcagttttttatagatttat |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5834687 |
tactatttttgtttacttcagttttttatagatttat |
5834651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University