View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20395_low_2 (Length: 582)
Name: NF20395_low_2
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_2 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] scaffold0103 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Complemental strand, 33653118 - 33652537
Alignment:
| Q |
1 |
acttcagaaagagaaatcatgcatgaaaatattggccaacttcgcacagactcgtctttgtcaaatcatgatcatgcaatgagaggaagtcagtctagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33653118 |
acttcagaaagagaaatcatgcatgaaaatattggccaacttcgcacagactcgtctttgtcaaatcatgatcatgcaatgagaggaagtcagtctagaa |
33653019 |
T |
|
| Q |
101 |
atgaagaagtatcatacaagttaccttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33653018 |
atgaagaagtatcatacaagttaccttcacttcatggtgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaa |
33652919 |
T |
|
| Q |
201 |
caaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33652918 |
caaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcacctaaagtctcagagattcaaatctctact |
33652819 |
T |
|
| Q |
301 |
cctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33652818 |
cctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggtggactcttcaaaagtggcgaaaggattccgta |
33652719 |
T |
|
| Q |
401 |
aacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttcatggaagttatgagttctcttcatccatgcttttggttattcga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33652718 |
aacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttcatggaagttatgagttctcttcatccatgcttttggttattcga |
33652619 |
T |
|
| Q |
501 |
tatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttggcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33652618 |
tatttcaaaagagaatttactttgtccattcttagctcagtagtaagtgtttggcacattgaattatttgtttttattgaac |
33652537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 290 - 457
Target Start/End: Complemental strand, 30922649 - 30922482
Alignment:
| Q |
290 |
aaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaa |
389 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
30922649 |
aaatctatactcctccgccaagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtgatgaa |
30922550 |
T |
|
| Q |
390 |
aggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggattgatactttttca |
457 |
Q |
| |
|
| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30922549 |
aaaatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggattgatactttttca |
30922482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 454 - 580
Target Start/End: Complemental strand, 30922452 - 30922326
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
30922452 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg |
30922353 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattga |
580 |
Q |
| |
|
||| |||||||||||||| ||||||| |
|
|
| T |
30922352 |
gcaaattgaattatttgttgttattga |
30922326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 125 - 458
Target Start/End: Complemental strand, 22977462 - 22977129
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgt |
224 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22977462 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaacttctacagatgcattacctaacaaaccattaatatatactgctgt |
22977363 |
T |
|
| Q |
225 |
gaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatg |
324 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22977362 |
gaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcatagattcaaatctctactcctcagccgagtaaccaagcaatg |
22977263 |
T |
|
| Q |
325 |
caagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagga |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
22977262 |
caagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtggtgaaaggatttcgtaagcttattttctttggaagaagga |
22977163 |
T |
|
| Q |
425 |
gttgaagaacctttgtggattgatactttttcat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
22977162 |
gttgaagaacctttgtggattgatactttttcat |
22977129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 125 - 457
Target Start/End: Complemental strand, 2626559 - 2626227
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgt |
224 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2626559 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaacttctacagctgcattacctaacaaaccattaatatatactgctgt |
2626460 |
T |
|
| Q |
225 |
gaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatg |
324 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2626459 |
gaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcatagattcaaatctctactcctccgccgagtaaccaagcaatg |
2626360 |
T |
|
| Q |
325 |
caagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagga |
424 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||| |||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
2626359 |
caagaatcaatccacaacagaaagaaatggataaatgatgaggagaactcttcaaaagtggttaaaggatttcgtaagcttattttctttggaagaagga |
2626260 |
T |
|
| Q |
425 |
gttgaagaacctttgtggattgatactttttca |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
2626259 |
gttgaagaacctttgtggattgatactttttca |
2626227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 125 - 458
Target Start/End: Original strand, 23810940 - 23811273
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactgacatgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctgt |
224 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23810940 |
cttcacttcgtggtgataataaccaacttcgaaataatactaacatgatcacaacttctacagttgcattacctaacaaaccattaatatatactgctgt |
23811039 |
T |
|
| Q |
225 |
gaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaatg |
324 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
23811040 |
gaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcatagattcaaatctctactcctctgccgagtaaccatgcaatg |
23811139 |
T |
|
| Q |
325 |
caagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagga |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
23811140 |
caagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtggtgaaaggatttcgtaagcttattttctttggaagaagga |
23811239 |
T |
|
| Q |
425 |
gttgaagaacctttgtggattgatactttttcat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23811240 |
gttgaagaacctttgtggattgatactttttcat |
23811273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 185 - 439
Target Start/End: Original strand, 34325111 - 34325365
Alignment:
| Q |
185 |
cagctgcaatacctaacaaaccattaatatatactgctgtgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcaga |
284 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| |||| ||||||||| ||||||| ||| |
|
|
| T |
34325111 |
cagctgcattacctaacaaaccattaatatatactgttgtgaattctaaggtgaatcagaaaatagaagaaagtaatgttacctcacctaaagtctgaga |
34325210 |
T |
|
| Q |
285 |
gattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
34325211 |
gattcaaatctctactcctccgccgagtaaccaagcaatgcaagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtg |
34325310 |
T |
|
| Q |
385 |
gcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttg |
439 |
Q |
| |
|
| ||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34325311 |
gtgaaagaatttcgtaagcttattttctttggaagaaggagttgaagaacctttg |
34325365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 454 - 582
Target Start/End: Complemental strand, 2626197 - 2626069
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
2626197 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcaatagaaagtgttta |
2626098 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||| |||||||||||||| ||||||||| |
|
|
| T |
2626097 |
gcaaattgaattatttgttgttattgaac |
2626069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 454 - 578
Target Start/End: Complemental strand, 22977100 - 22976976
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
22977100 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagatagtttactttgtccattattagctcaataaaaagtgtttg |
22977001 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttatt |
578 |
Q |
| |
|
||| |||||||||||||| ||||| |
|
|
| T |
22977000 |
gcaaattgaattatttgttgttatt |
22976976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 454 - 578
Target Start/End: Original strand, 23811302 - 23811426
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
23811302 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagatagtttactttgtccattattagctcaataaaaagtgtttg |
23811401 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttatt |
578 |
Q |
| |
|
||| |||||||||||||| ||||| |
|
|
| T |
23811402 |
gcaaattgaattatttgttgttatt |
23811426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 488 - 582
Target Start/End: Original strand, 34325362 - 34325456
Alignment:
| Q |
488 |
tttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttggcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||||||||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| |
|
|
| T |
34325362 |
tttggttattcaatatttgaaaagagagtttactttgtccattattagctcagtagaaagtgtttgacaaattgaattatttgttgttattgaac |
34325456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 125 - 463
Target Start/End: Complemental strand, 47388908 - 47388569
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
223 |
Q |
| |
|
||||||||| || ||||||||||||| |||| |||||||| | ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47388908 |
cttcacttcgtgttgataataaccaacttcgaaataatactaaacatgatcacaacttcaacagctgcattacctaacaaaccattaatatatactgctg |
47388809 |
T |
|
| Q |
224 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47388808 |
tgaattctaaggtgaatcaggaaatagaagaaagaaatgttacctcacctaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
47388709 |
T |
|
| Q |
324 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||||| ||||| ||||||||||||||| |
|
|
| T |
47388708 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaagg |
47388609 |
T |
|
| Q |
424 |
agttgaagaacctttgtggattgatactttttcatggaag |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47388608 |
agttgaagaacctttgtggattgatactttttcatagaag |
47388569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 454 - 582
Target Start/End: Complemental strand, 47388545 - 47388417
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||| |||||||| |||||| ||||||||| || ||||||||| |
|
|
| T |
47388545 |
ttcatggaagttatgagttctctttattcatgcttttggttattcaatatttcaaaatagagtttactttatccattattagctcagaagaaagtgtttg |
47388446 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||| |||||||||||||| ||||||||| |
|
|
| T |
47388445 |
gcaaattgaattatttgttgttattgaac |
47388417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 125 - 457
Target Start/End: Original strand, 42921847 - 42922180
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
223 |
Q |
| |
|
||||||||| ||| ||||||||||||| | || |||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42921847 |
cttcacttcgtggtgataataaccaactttgaaataatactaaacatgatcacaacttctacagctgcattacctaacaaaccattaatatatactgctg |
42921946 |
T |
|
| Q |
224 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42921947 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
42922046 |
T |
|
| Q |
324 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagg |
423 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||||| ||||| ||||||||||||||| |
|
|
| T |
42922047 |
gcaagtatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaagg |
42922146 |
T |
|
| Q |
424 |
agttgaagaacctttgtggattgatactttttca |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42922147 |
agttgaagaacctttgtggattgatactttttca |
42922180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 454 - 582
Target Start/End: Original strand, 42922210 - 42922338
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||| | || ||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||| |||| |||| |
|
|
| T |
42922210 |
ttcatggaagttatgagttctctttatccgtactcttggttattgaatatttcaaaagagagtttactttgtccattattaactcagtagaaagtctttg |
42922309 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||| |||||||||||||| ||||||||| |
|
|
| T |
42922310 |
gcaaattgaattatttgttgttattgaac |
42922338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 125 - 457
Target Start/End: Complemental strand, 45288146 - 45287813
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
223 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| | ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
45288146 |
cttcacttcgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctacagctgcattacctaacaaaccatcaatatatactgctg |
45288047 |
T |
|
| Q |
224 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45288046 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
45287947 |
T |
|
| Q |
324 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| ||||| ||| ||||| ||||| |||||||||||||| |
|
|
| T |
45287946 |
gcaagaatcaatccacaacaggaagaaatggataaatgattaggagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaaga |
45287847 |
T |
|
| Q |
424 |
agttgaagaacctttgtggattgatactttttca |
457 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |
|
|
| T |
45287846 |
agttgaaaaacctttgtgggttgatactttttca |
45287813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 125 - 457
Target Start/End: Original strand, 19251792 - 19252112
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
223 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| | ||||||||||| |||||||| |||| ||||||||||||||||||||||||| | || |
|
|
| T |
19251792 |
cttcacttcgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctacagttgcattacctaacaaaccattaatatataccgttg |
19251891 |
T |
|
| Q |
224 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19251892 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctc-------------tctactcctccgccgagtaaccaagcaat |
19251978 |
T |
|
| Q |
324 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||| ||| ||||| ||||| ||||||||||||||| |
|
|
| T |
19251979 |
acaagaatcaatccacaacaggaagaaatggataaataatgaggagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaagg |
19252078 |
T |
|
| Q |
424 |
agttgaagaacctttgtggattgatactttttca |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
19252079 |
agttgaagaacctttgtggattgatactttttca |
19252112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 125 - 457
Target Start/End: Original strand, 19324976 - 19325296
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
223 |
Q |
| |
|
||||||||| ||| ||||||||||||| |||| |||||||| | ||||||||||| |||||||| |||| ||||||||||||||||||||||||| | || |
|
|
| T |
19324976 |
cttcacttcgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctacagttgcattacctaacaaaccattaatatataccgttg |
19325075 |
T |
|
| Q |
224 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
323 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19325076 |
tgaattctaaggtgaatcaggaaatagaagaaagtaatgttacctcacctaaagtctc-------------tctactcctccgccgagtaaccaagcaat |
19325162 |
T |
|
| Q |
324 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaagg |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||| ||| ||||| ||||| ||||||||||||||| |
|
|
| T |
19325163 |
acaagaatcaatccacaacaggaagaaatggataaataatgaggagaactcttcaaaagtggtgaaagaatttcgtaagcttattttctttggaagaagg |
19325262 |
T |
|
| Q |
424 |
agttgaagaacctttgtggattgatactttttca |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
19325263 |
agttgaagaacctttgtggattgatactttttca |
19325296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 125 - 414
Target Start/End: Original strand, 3753064 - 3753354
Alignment:
| Q |
125 |
cttcacttcatggcgataataaccaacctcgacataatactga-catgatcacaaattctacagctgcaatacctaacaaaccattaatatatactgctg |
223 |
Q |
| |
|
||||||| | ||| ||||||||||||| |||| |||||||| | ||||||||||| |||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
3753064 |
cttcactccgtggtgataataaccaacttcgaaataatactaaacatgatcacaacttctactgctgtattacctaacaaaccattaatatatactgctg |
3753163 |
T |
|
| Q |
224 |
tgaattcaaaggtgaatcaggaaatagaagaaagcaatgctacctcaccgaaagtctcagagattcaaatctctactcctccgccgagtaaccaagcaat |
323 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
3753164 |
tgaattctaaggtgaatcagaaaatagaagaaagtaatgttacctcacctaaagtctcagagattcaaatatctactcctccgtcgagtaaccaagcaat |
3753263 |
T |
|
| Q |
324 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttcttt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||| ||||| |||||| |
|
|
| T |
3753264 |
gcaagaatcaatccacaacaggaagaaatggataaatgatgaggagaactcttcaaaagtggtgaaagaattttgtaagcttattttcttt |
3753354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 454 - 582
Target Start/End: Original strand, 19252142 - 19252270
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
19252142 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg |
19252241 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||| |||||||||||||| ||||||||| |
|
|
| T |
19252242 |
gcaaattgaattatttgttgttattgaac |
19252270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 454 - 582
Target Start/End: Original strand, 19325326 - 19325454
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
19325326 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg |
19325425 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||| |||||||||||||| ||||||||| |
|
|
| T |
19325426 |
gcaaattgaattatttgttgttattgaac |
19325454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 454 - 582
Target Start/End: Complemental strand, 45287783 - 45287654
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtg-ttt |
552 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||||||||||||||| ||||| |||||| ||||| ||| |
|
|
| T |
45287783 |
ttcatggaagttatgagttctctttatccatgcatttggttattcaatatttcaaaagagagtttactttgtccattattagcccagtagaaagtgtttt |
45287684 |
T |
|
| Q |
553 |
ggcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |
|
|
| T |
45287683 |
ggcaaattgaattatttgttgttattgaac |
45287654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 474 - 582
Target Start/End: Original strand, 3753350 - 3753458
Alignment:
| Q |
474 |
tcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttggcacgttgaattatttgttt |
573 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
3753350 |
tctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttggcaaattgaattatttgttg |
3753449 |
T |
|
| Q |
574 |
ttattgaac |
582 |
Q |
| |
|
||||||||| |
|
|
| T |
3753450 |
ttattgaac |
3753458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 454 - 581
Target Start/End: Complemental strand, 4802653 - 4802526
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
4802653 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttgtccattattagctcagtagaaagtgtttg |
4802554 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattgaa |
581 |
Q |
| |
|
||| |||||||||||||| |||||||| |
|
|
| T |
4802553 |
gcaaattgaattatttgttgttattgaa |
4802526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 346 - 457
Target Start/End: Original strand, 11444 - 11555
Alignment:
| Q |
346 |
aagaaatggataaatgatgaggcggactcttcaaaagtggcgaaaggattccgtaaacttatcttctttggaagaaggagttgaagaacctttgtggatt |
445 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11444 |
aagaaatggataaatgatgaggagaactcttcaaaagtggtgaaaggatttcgtaagcttattttctttggaagaaggagttgaagaacctttgtggatt |
11543 |
T |
|
| Q |
446 |
gatactttttca |
457 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11544 |
gatactttttca |
11555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 454 - 582
Target Start/End: Original strand, 11585 - 11713
Alignment:
| Q |
454 |
ttcatggaagttatgagttctcttcatccatgcttttggttattcgatatttcaaaagagaatttactttgtccattcttagctcagtagcaagtgtttg |
553 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||| ||| |||||||| |
|
|
| T |
11585 |
ttcatggaagttatgagttctctttatccatgcttttggttattcaatatttcaaaagagagtttactttatccattattagctcaatagaaagtgttta |
11684 |
T |
|
| Q |
554 |
gcacgttgaattatttgtttttattgaac |
582 |
Q |
| |
|
||| |||||||||||||| ||||||||| |
|
|
| T |
11685 |
gcaaattgaattatttgttgttattgaac |
11713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University