View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_low_29 (Length: 227)
Name: NF20395_low_29
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_29 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 40544410 - 40544200
Alignment:
| Q |
1 |
gaaaaccattacaaataaagcctaacaagatatgataatcatcattaaacaaagattgactagcaactaaactggtgttgttcacctaacatctacggac |
100 |
Q |
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| T |
40544410 |
gaaaaccattacaaataaagcctaacaagatatgataatcatcattaaacaaagattgactagtagctaaactggtgttgttcacccaacatctacggac |
40544311 |
T |
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| Q |
101 |
taacaaccttgcttgcaatgacttccgcgcacggtccatgacaacgaaaataagagaatccacagtctttatatctatccagttacaaatcaaattggct |
200 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40544310 |
taataaccttgcttgcaatgacttccgcacacggtccatgacaacgaaaataagagaatccacagtctttatatctatccagttacggatcaaattggct |
40544211 |
T |
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| Q |
201 |
acggatgcaag |
211 |
Q |
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||||||||||| |
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| T |
40544210 |
acggatgcaag |
40544200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 20576 - 20784
Alignment:
| Q |
1 |
gaaaaccattacaaataaagcctaacaagatatgataatcatcattaaacaaagattgactagcaactaa-actggtgttgttcacctaacatctacgga |
99 |
Q |
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| T |
20576 |
gaaaaacattacaaataaagcctaacaagatatgataatcatcaataaacagcgaa--aatgtcagcgaacaacggttttgttcacccaacatctacaga |
20673 |
T |
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| Q |
100 |
ctaacaaccttgcttgcaatgacttccgcgcacggtccatgacaacgaaaataagagaatccacagtctttatatctatccagttacaaatcaaattggc |
199 |
Q |
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| T |
20674 |
ctaacaaccttgcttgcaaagttttccgcacacggtccatgacagcgaaaatgagagaatccacaat-tttatatctatccagttagggatcatattggc |
20772 |
T |
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| Q |
200 |
tacggatgcaag |
211 |
Q |
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| T |
20773 |
aacggctgcaag |
20784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 35407417 - 35407498
Alignment:
| Q |
130 |
cacggtccatgacaacgaaaataagagaatccacagtctttatatctatccagttacaaatcaaattggctacggatgcaag |
211 |
Q |
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| T |
35407417 |
cacgatccatgacaacgaagaaaagagaatccacagtctttttatctatccagttacggatcaaattggctactgctgcaag |
35407498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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