View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_low_3 (Length: 538)
Name: NF20395_low_3
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_3 |
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| [»] scaffold0518 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 6 - 523
Target Start/End: Original strand, 24893674 - 24894191
Alignment:
| Q |
6 |
gtccaagaatatttcattagcaggcaaattcatattcaattctaccagaatctcaaaatcacaaaaaatgcacaagatttagaaaacactgaatcatggc |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24893674 |
gtccaataatatttcattagcaggcaaattcatattcaattctaccagaatctcaaaatcacaaaaaatgcacaagatttagaaaacactgaatcatagc |
24893773 |
T |
|
| Q |
106 |
attttacataacacaagtcacataaatatattcatttattttttcatgcttagaaaacattgttaaaaccatacttaatcatatagaatagaacaaaata |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
24893774 |
attttacataacacaagtcacagaaatatattcatttattttttcatgcttagcaaacattgttaaaaccatacttaatcatacataatagaacaaaata |
24893873 |
T |
|
| Q |
206 |
gcatatatgagtaaattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttagacaaaaat |
305 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24893874 |
gcatatatgagtcaattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaaaataactttagacaaaaat |
24893973 |
T |
|
| Q |
306 |
ttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttggtccgttga |
405 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24893974 |
ttcatttccaatatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatggtgctcttggtccgttga |
24894073 |
T |
|
| Q |
406 |
aaatttaaacatcaagtacatatctagctcannnnnnncaaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcatt |
505 |
Q |
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| T |
24894074 |
aaatttaaacatcaggtacatatctagctcatttttttcaaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcatt |
24894173 |
T |
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| Q |
506 |
taataacaaagtaaatat |
523 |
Q |
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|||||| ||||||||||| |
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| T |
24894174 |
taataataaagtaaatat |
24894191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0518 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0518
Description:
Target: scaffold0518; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 198 - 412
Target Start/End: Complemental strand, 9674 - 9459
Alignment:
| Q |
198 |
acaaaatagcatatatgagtaaattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttag |
297 |
Q |
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| T |
9674 |
acaaaacaacatatgtgaatcaattctagatctcacatagttaaattgctcaactagtttctctttctaaataatggttttgaaatcaaaataactttcg |
9575 |
T |
|
| Q |
298 |
-acaaaaatttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttg |
396 |
Q |
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|||||| | |||||| || |||||||||||| ||||||||| || |||||||||||||||| |||||||||| |||||||||| ||| ||||||| |
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| T |
9574 |
gacaaaattctcatttataaaatttggagaaatataatgggatcatattcccattataacaatttataaaactcttgtttaaattttcatgacgctcttg |
9475 |
T |
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| Q |
397 |
gtccgttgaaaattta |
412 |
Q |
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| T |
9474 |
atccgttgaaaattta |
9459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 26816482 - 26816396
Alignment:
| Q |
297 |
gacaaaaatttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttt |
383 |
Q |
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| T |
26816482 |
gacaaaaatctcatttctaaaatttggagaaatataatgggatcattttcccattttaacaatgtataaaactcttgtttaaatttt |
26816396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 444 - 515
Target Start/End: Complemental strand, 31329712 - 31329641
Alignment:
| Q |
444 |
caaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcatttaataacaaa |
515 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||||||||| | |||||||||| ||||||| ||||||| |
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| T |
31329712 |
caaaatcaatagaaaacaaattttggaattccgacaacgtcaagacatttcataaactcatttattaacaaa |
31329641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 444 - 515
Target Start/End: Complemental strand, 31336433 - 31336362
Alignment:
| Q |
444 |
caaaatcaatagaaaacaaatcttgaaattccgacaacgtcagaatatttcataaattcatttaataacaaa |
515 |
Q |
| |
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||||||||||||||||||||| ||| |||||||||||||||| | |||||||||| ||||||| ||||||| |
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| T |
31336433 |
caaaatcaatagaaaacaaattttggaattccgacaacgtcaagacatttcataaactcatttattaacaaa |
31336362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 416
Target Start/End: Complemental strand, 22627991 - 22627875
Alignment:
| Q |
297 |
gacaaaaatttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttg |
396 |
Q |
| |
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||||||| | ||||| |||| ||||| |||||| |||||||||||||||| |||| ||||||||||||||| | ||||||||||| ||| ||||||| |
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| T |
22627991 |
gacaaaattctcattaccaaaatttgtagaaatataatgggattatcttctcattctaacaatgtataaaatt---ctttaaattttcatgacgctcttg |
22627895 |
T |
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| Q |
397 |
gtccgttgaaaatttaaaca |
416 |
Q |
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||| | | ||||||||||| |
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| T |
22627894 |
atccataggaaatttaaaca |
22627875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 424
Target Start/End: Complemental strand, 31329948 - 31329729
Alignment:
| Q |
206 |
gcatatatgagtaaattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttaga-caaaaa |
304 |
Q |
| |
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|||||| ||| | |||| |||| ||||| ||||||| ||||||||| | |||| |||| | |||| ||||||||| || |||||||| | |||||| |
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| T |
31329948 |
gcatatgtgaatcaattctagatctcacgtagttaaattgctcaacgagtttctcatttcaagtaatggttttgaaatcaaaataactttccaacaaaaa |
31329849 |
T |
|
| Q |
305 |
tttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttggtccgttg |
404 |
Q |
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| | |||| || |||||||||||| ||||| ||| |||| ||||| | |||||| |||||||| |||||||||| ||| ||||||||||| || |
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| T |
31329848 |
tcttgtttcaaaaatttggagaaatataatgagatcatctacccatacgagcaatgtgtaaaactcttgtttaaattttcatgacgctcttggtccattc |
31329749 |
T |
|
| Q |
405 |
aaaatttaaacatcaagtac |
424 |
Q |
| |
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|||||||||||| ||| ||| |
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| T |
31329748 |
aaaatttaaacaacaaatac |
31329729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 424
Target Start/End: Complemental strand, 31336669 - 31336450
Alignment:
| Q |
206 |
gcatatatgagtaaattgtagacctcacatagttaacttgctcaacaactttcccattcacaacaatgattttgaaattaatataactttaga-caaaaa |
304 |
Q |
| |
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|||||| ||| | |||| |||| ||||| ||||||| ||||||||| | |||| |||| | |||| ||||||||| || |||||||| | |||||| |
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| T |
31336669 |
gcatatgtgaatcaattctagatctcacgtagttaaattgctcaacgagtttctcatttcaagtaatggttttgaaatcaaaataactttccaacaaaaa |
31336570 |
T |
|
| Q |
305 |
tttcatttccaacatttggagaaatgtaatgggattatcttcccattataacaatgtataaaactcagctttaaatttttatgttgctcttggtccgttg |
404 |
Q |
| |
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| | |||| || |||||||||||| ||||| ||| |||| ||||| | |||||| |||||||| |||||||||| ||| ||||||||||| || |
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| T |
31336569 |
tcttgtttcaaaaatttggagaaatataatgagatcatctacccatacgagcaatgtgtaaaactcttgtttaaattttcatgacgctcttggtccattc |
31336470 |
T |
|
| Q |
405 |
aaaatttaaacatcaagtac |
424 |
Q |
| |
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|||||||||||| ||| ||| |
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| T |
31336469 |
aaaatttaaacaacaaatac |
31336450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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