View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20395_low_30 (Length: 227)
Name: NF20395_low_30
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 46451377 - 46451572
Alignment:
| Q |
13 |
caacaagttaacgatatatgcttaaagaatcatgttaatgatataaagtagtcatgactattatttaataaattatagtttttcattacattattcagga |
112 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46451377 |
caacaagttaatggtatatgctttaagaatcatgttaatgatataaaatagtcatgactattatttaataaattatagtttttcattacattattcagga |
46451476 |
T |
|
| Q |
113 |
agggcagaaagagcaaccaaaggtggctgtagacccaattacaccaacatcagcaccaactccaccaccacaaccacaaccaacttatactcgttc |
208 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46451477 |
agggcagaaagagcaaccaaaggtgcctgtagacccaattacaccaacatcagcaccaactccaccaccacaaccacaaccaacttatactcgttc |
46451572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 185
Target Start/End: Original strand, 46462341 - 46462526
Alignment:
| Q |
2 |
atcatatgtaacaacaagttaacgatatatgcttaaagaatcatgttaatgatataaagtagtcatgactattatttaataaattata--gtttttcatt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
46462341 |
atcatatgtaacaacaagttaacgatatatgctttaagaatcatgttaatggtataaaatagtcattgctatcatttaataaattatatagtttttcatt |
46462440 |
T |
|
| Q |
100 |
acattattcaggaagggcagaaagagcaaccaaaggtggctgtagacccaattacaccaacatcagcaccaactccaccaccacaa |
185 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46462441 |
acatttatcaggaagggcagaaagagcaaccaaaggtacctgtagattcaattacaccaacatcagcaccaactccaccaccacaa |
46462526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 46345119 - 46344998
Alignment:
| Q |
64 |
tcatgactattatttaataaattatagtttttcattacattattcaggaagggcagaaagagcaaccaaaggtggctgtagacccaattacaccaacatc |
163 |
Q |
| |
|
|||| ||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||| || ||||| || |||||||||||||| || |||| |
|
|
| T |
46345119 |
tcattactgttatttaatcaataataatttttcattacattattcaggaagagcagaaagagcaatcagaggtgcctctagacccaattacaacaccatc |
46345020 |
T |
|
| Q |
164 |
agcaccaactccaccaccacaa |
185 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
46345019 |
agcaccaactccaccaccacaa |
46344998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 46471087 - 46471126
Alignment:
| Q |
98 |
ttacattattcaggaagggcagaaagagcaaccaaaggtg |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46471087 |
ttacattattcaggaagggcagaaagagcaaccaaaggtg |
46471126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 46465880 - 46465919
Alignment:
| Q |
98 |
ttacattattcaggaagggcagaaagagcaaccaaaggtg |
137 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
46465880 |
ttacattattcaggaagcgcagaaagagcaatcaaaggtg |
46465919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University