View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20395_low_32 (Length: 207)
Name: NF20395_low_32
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_32 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 39942826 - 39943032
Alignment:
| Q |
1 |
tatgatttgtgcaaataaaaaatcaaattattacatatgtgttatctaatttgtgcaaatcgcatccatcttcaacacattcagaaattttagatattgg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||| || |
|
|
| T |
39942826 |
tatgatttgtgctaataaaaaatcaaattattagatatgtgttatctaatttatgcaaatcgcatccatcttcaacacatttaggaattttagatatcgg |
39942925 |
T |
|
| Q |
101 |
tgaccgttcaatcaagatcagacagttcaaatttaacttcgatattttaaattataaaatcaaaatcagccttttttagatcttccaatcttgattaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39942926 |
tgaccgttcaatcaagatcagacagttcaaatttaacttcgatattttaaattataaaatcaaaatcagccttttttagatcttccaatcttgattaaac |
39943025 |
T |
|
| Q |
201 |
ggttagc |
207 |
Q |
| |
|
||||||| |
|
|
| T |
39943026 |
ggttagc |
39943032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 20897144 - 20897193
Alignment:
| Q |
111 |
atcaagatcagacagttcaaatttaacttcgatattttaaattataaaat |
160 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||| |||||||||||| |
|
|
| T |
20897144 |
atcaagatcagtcagttcaaattcaagttcgatatttaaaattataaaat |
20897193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University