View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20395_low_6 (Length: 401)
Name: NF20395_low_6
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 46399958 - 46400331
Alignment:
| Q |
19 |
gatccgccatggtaaatcatgaaaaataagtgggaccatgccaaattcaaaaagatggaaaggaatgnnnnnnnncgcgggaacgtaaccgttttctata |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46399958 |
gatccgccatggtaaatcatgaaaaataagtgggaccatgccaaattcaaaaagatggaaaggaatgaaaaaaaacgcgggaacgtaaccgttttctata |
46400057 |
T |
|
| Q |
119 |
gcactcacttctttgctctaacgtcttagcgagtttctcatttcccgctctatataaacacacacgcattccttcacttc---aaatctcattcacaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46400058 |
gcactcacttctttgctctaacgtcttagcgagtttctcatttcccgctctatataaacacacacgcattccttcacttcttcaaatctcattcacaatt |
46400157 |
T |
|
| Q |
216 |
caaaatctctctctctaaatttatctctgcattcaaactttccctccactatcacgatgcttgcaagcttgaagtaaatcacagaaaccagatccatttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46400158 |
caaaatctctctctctaaatttatctctgcattcaaactttccctccactatcacgatgcttgcaagcttgaagtaaatcacagaaaccagatccatttc |
46400257 |
T |
|
| Q |
316 |
ttctccatttcatagtttcaattccacttccattttgatcggttcataatttatcttttccgttttcgttttca |
389 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46400258 |
ttctccatttcatagtttcaattccagttccattttgatcggttcataatttatcttttccgttttcgttttca |
46400331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 232 - 389
Target Start/End: Original strand, 18554221 - 18554384
Alignment:
| Q |
232 |
aaatttatctctgcattcaaactttccctccactatcacgatgcttgcaagcttg------aagtaaatcacagaaaccagatccatttcttctccattt |
325 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||| |
|
|
| T |
18554221 |
aaatgtatttctgcattcaaactttccctccaccatcacgatgcttgcaagcttgaacttgaagtaaatcacataaaccataaccatttcttctccattt |
18554320 |
T |
|
| Q |
326 |
catagtttcaattccacttccattttgatcggttcataatttatcttttccgttttcgttttca |
389 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
18554321 |
tatagtttcaattccacttccattttaatcggttaataatttatctattccgtttttgttttca |
18554384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University