View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_low_7 (Length: 395)
Name: NF20395_low_7
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 7330066 - 7329702
Alignment:
| Q |
13 |
attctcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcaatgnnnnnnnnnnnnnctagaacataaacacaaagtaaat |
112 |
Q |
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| T |
7330066 |
attctcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcgatgaaaaacgaaaaaactagaacataaacacaaagtaaat |
7329967 |
T |
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| Q |
113 |
gatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagatatgtactgcagtg |
212 |
Q |
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| T |
7329966 |
gatgtgaagtgtttcatcattctcaagtttatagcatcttataatatgccaacaagttgcaaactgtagtgcttggaactatcagatatgtactgcagtg |
7329867 |
T |
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| Q |
213 |
gtaatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcatttcagattcattagttacatgaccttaaatcagaactggatgc |
312 |
Q |
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| T |
7329866 |
gtaatttcctaatagagttttcctcattctcaagtttccaaagttcatttcattcatttcagattcattagttacatgaccttaaatcagaactggatgc |
7329767 |
T |
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| Q |
313 |
atcagactttgtgatcagatttatagaatattgttgtgttgcatcgctattgtcgctactaaagc |
377 |
Q |
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| T |
7329766 |
atcagactttgtgatcagatttatagaatattgttgtgttgcattgctattgtcgctactaaagc |
7329702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 215 - 377
Target Start/End: Original strand, 7310115 - 7310275
Alignment:
| Q |
215 |
aatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcattt-cagattcattagttacatgaccttaaatcagaactggatgca |
313 |
Q |
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| T |
7310115 |
aatttgataataaagttttcccctttctcaagtttccgaagttcttctaattcattttcagatgcatcagtaacatgaccctaaatcagaactggatgca |
7310214 |
T |
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| Q |
314 |
tcagactttgtgatcagatttatagaatattgttgtgttgcatcgctattgtcgctactaaagc |
377 |
Q |
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| T |
7310215 |
tcagactttgtgatcagatttatagaatattgttg---tgcatcgctattgtcgcaactaaagc |
7310275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 7300846 - 7300924
Alignment:
| Q |
269 |
tttcagattcattagttacatgaccttaaatcagaactggatgcatcagactttgtgatcagatttatagaatattgttgt |
349 |
Q |
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| T |
7300846 |
tttcggatgcattagtaacatgaccctaaatcagaactggatgcatcagac--tgcgatcaaatttacagaatgttgttgt |
7300924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 7309913 - 7309957
Alignment:
| Q |
23 |
tcaggttgtagatctacaattcaaaatgaacccatttaaacaata |
67 |
Q |
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| T |
7309913 |
tcaggttgtagatctacaattcaaaatgaaccaatttcaacaata |
7309957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 7309996 - 7310079
Alignment:
| Q |
106 |
agtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagat |
199 |
Q |
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| T |
7309996 |
agtaaatcatgtgaagtgtttcattattctcaagattatag----------cctgccaacaagttacaaaatgtagtgcttggaacaatcagat |
7310079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 22482274 - 22482321
Alignment:
| Q |
218 |
ttcataatagagttttcctcattctcaagtttccaaagctcatttcat |
265 |
Q |
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| T |
22482274 |
ttcataatagagttttcccgattcttaactttccaaagctcatttcat |
22482321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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