View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20395_low_8 (Length: 395)
Name: NF20395_low_8
Description: NF20395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20395_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 366
Target Start/End: Original strand, 23576145 - 23576500
Alignment:
| Q |
11 |
cagagatattggcggaagaagtgcttggtaagatgagagcaccacccaagagtgatgtaccgatcattaccccgaatgaactctctgagggtgacggttt |
110 |
Q |
| |
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|||| |||||| | ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||| ||||| |
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| T |
23576145 |
cagaaatattgccagaagaggtacttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaaccgaaggtgatggttt |
23576244 |
T |
|
| Q |
111 |
tgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcaggg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
23576245 |
tgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggactatggaaaacacaacagcttgccggt |
23576344 |
T |
|
| Q |
211 |
aagcctgccggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctcctagtgcattgtt |
310 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23576345 |
aagcctgctggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctcctagtgcattgtt |
23576444 |
T |
|
| Q |
311 |
tgtagtgtttgtgagaattacagaatcacggctaaccagtgtagtttttgttaaaa |
366 |
Q |
| |
|
|| | ||||| |||||||||||||||| |||||||||| |||| |||||||||||| |
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|
| T |
23576445 |
tggaatgtttatgagaattacagaatcgcggctaaccactgtaatttttgttaaaa |
23576500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 374
Target Start/End: Original strand, 23595738 - 23596076
Alignment:
| Q |
34 |
cttggtaagatgagagcaccacccaagagtgatgtaccgatcattaccccgaatgaactctctgagggtgacggttttgtctttggatttccaacaagat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||| |
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|
| T |
23595738 |
cttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttttctttggatttccaacaagat |
23595837 |
T |
|
| Q |
134 |
ttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttctacag |
233 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23595838 |
ttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcagggaagcctgccggaatcttctacag |
23595937 |
T |
|
| Q |
234 |
caccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctcctagtgcattgtttgtagtgtttgtgagaattacag |
333 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| || ||||||||||| | ||||||||||| |||| |||| ||| | |||| ||||||||| || |
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|
| T |
23595938 |
catcagttcccaaggcgatggccaagagactacaacggaagagcctttagtggatcatattct--tagtacatttattggactgttggtgagaattgcaa |
23596035 |
T |
|
| Q |
334 |
aatcacggctaaccagtgtagtttttgttaaaaactacact |
374 |
Q |
| |
|
||||| ||| ||| ||||| |||||||||||| ||||||| |
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|
| T |
23596036 |
aatcatggcgaacaagtgttatttttgttaaaagctacact |
23596076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 34 - 374
Target Start/End: Original strand, 23604660 - 23604998
Alignment:
| Q |
34 |
cttggtaagatgagagcaccacccaagagtgatgtaccgatcattaccccgaatgaactctctgagggtgacggttttgtctttggatttccaacaagat |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||| |
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|
| T |
23604660 |
cttggtaagatgagagcaccacccaagagtgatgtaccaatcattaccccgaatgaactaactgaaggtgatggttttttctttggatttccaacaagat |
23604759 |
T |
|
| Q |
134 |
ttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttctacag |
233 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23604760 |
ttggaatgatggctgcttagtttaaagcctttatagatgcaattggtggtctctggaaaacgcaacagcttgcagggaagcctgccggaatcttctacag |
23604859 |
T |
|
| Q |
234 |
caccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctcctagtgcattgtttgtagtgtttgtgagaattacag |
333 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| || ||||||||||| | ||||||||||| |||| |||| ||| | |||| ||||||||| || |
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|
| T |
23604860 |
catcagttcccaaggcgatggccaagagactacaacggaagagcctttagtggatcatattct--tagtacatttattggactgttggtgagaattgcaa |
23604957 |
T |
|
| Q |
334 |
aatcacggctaaccagtgtagtttttgttaaaaactacact |
374 |
Q |
| |
|
||||| ||| ||| ||||| |||||||||||| ||||||| |
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|
| T |
23604958 |
aatcatggcgaacaagtgttatttttgttaaaagctacact |
23604998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 23590454 - 23590747
Alignment:
| Q |
11 |
cagagatattggcggaagaagtgcttggtaagatgagagcaccacccaagagtgatgtaccgatcattaccccgaatgaactctctgagggtgacggttt |
110 |
Q |
| |
|
|||| |||||||| || ||||| ||||| ||||||||||||||||||||| ||||||||| || | |||||| ||||| || ||||||||||| ||||| |
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|
| T |
23590454 |
cagaaatattggcagacgaagtacttggaaagatgagagcaccacccaag--tgatgtaccaattactacccccaatgagctttctgagggtgatggttt |
23590551 |
T |
|
| Q |
111 |
tgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcaggg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
23590552 |
tgtctttggatttccaacaagatttggaatgatggctgctcaatttaaagcctttctagatgcaactggtggtctttggaaaacacaacagcttgtaggg |
23590651 |
T |
|
| Q |
211 |
aagcctgccggaatcttctacagcaccagttcccaaggcggtggccaagagactacagcgtaagagcctttactcgatcatattctcctagtgcat |
306 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| || |||||||| |
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|
| T |
23590652 |
aagcctgccagaatcttctacaacactagttcccaaggcggtggacaagagactacagcgtaagagcctttactcgaacctattatcttagtgcat |
23590747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 23564535 - 23564476
Alignment:
| Q |
162 |
ctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccgg |
221 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
23564535 |
ctttctagaagaaactgtaggtctatggaaaacaggacagcttgcagggaagcctgccgg |
23564476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 31 - 277
Target Start/End: Original strand, 34339519 - 34339765
Alignment:
| Q |
31 |
gtgcttggtaagatgagagcaccacccaagagtgatgtaccgatcattaccccgaatgaactctctgagggtgacggttttgtctttggatttccaacaa |
130 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |||| || || |||||||| ||||||||||| |||||||||||||| || ||||||| |
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|
| T |
34339519 |
gtgcttggaaagatgagtgcaccacccaagagtgatgtaccactcatcacaccaaatgaactgtctgagggtgatggttttgtctttggcttcccaacaa |
34339618 |
T |
|
| Q |
131 |
gatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatcttcta |
230 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| ||||| ||||||||| |||||||||||||||||||| |
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|
| T |
34339619 |
gatttggaatgatggctgctcaattcaaagcttttcttgatgctactggtggtttgtggaaagcacaatcgcttgcaggcaagcctgccggaatcttcta |
34339718 |
T |
|
| Q |
231 |
cagcaccagttcccaaggcggtggccaagagactacagcgtaagagc |
277 |
Q |
| |
|
|||||| |||| ||||| || || |||||||||||||||||||||| |
|
|
| T |
34339719 |
cagcactggttctcaaggtggaggacaagagactacagcgtaagagc |
34339765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 267
Target Start/End: Complemental strand, 2649524 - 2649383
Alignment:
| Q |
126 |
aacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatc |
225 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||| | ||| ||||||| | |||||| ||||| | |||||||| |||||||| || ||| |
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|
| T |
2649524 |
aacaagatttggaatgatggctactcaattcaaagcatttatggatacaactggagacctatggtgcacacagaaacttgcaggaaagcctgctggcatc |
2649425 |
T |
|
| Q |
226 |
ttctacagcaccagttcccaaggcggtggccaagagactaca |
267 |
Q |
| |
|
|| |||||||| || ||||| ||||||||||| |||||| |
|
|
| T |
2649424 |
ttttacagcactgcttgtcaaggaggtggccaagaaactaca |
2649383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 2645731 - 2645619
Alignment:
| Q |
106 |
ggttttgtctttggatttccaacaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttg |
205 |
Q |
| |
|
|||||| | ||||| |||||| |||||| |||||||||| ||||||| || |||| ||| | ||||||||||| || ||||||| | |||| |||| |
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|
| T |
2645731 |
ggttttttgtttggttttccagcaagatatggaatgatgtctgctcaattcaaagtattttttgatgcaactggaagtttatggaacaaacaaacacttg |
2645632 |
T |
|
| Q |
206 |
cagggaagcctgc |
218 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
2645631 |
caggaaagcctgc |
2645619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 127 - 267
Target Start/End: Original strand, 36461709 - 36461849
Alignment:
| Q |
127 |
acaagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatggaaaacacaacagcttgcagggaagcctgccggaatct |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||| || || |||||||| |||||||| ||||||| |
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|
| T |
36461709 |
acaagatttggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatggcgtactcaggcacttgcaggaaagcctgcaggaatct |
36461808 |
T |
|
| Q |
227 |
tctacagcaccagttcccaaggcggtggccaagagactaca |
267 |
Q |
| |
|
| |||||||| |||| || || || || |||||||||||| |
|
|
| T |
36461809 |
tttacagcactggttctcagggaggaggacaagagactaca |
36461849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 36455339 - 36455400
Alignment:
| Q |
128 |
caagatttggaatgatggctgctcagtttaaagcctttctagatgcaactggtggtctatgg |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||| |
|
|
| T |
36455339 |
caagatttggaatgatggctgctcagtttaaagcattcttggatgcaactggtggcctatgg |
36455400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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