View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_high_10 (Length: 247)
Name: NF20396_high_10
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_high_10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 37637736 - 37637507
Alignment:
| Q |
17 |
catcattagcagcacacccaacaatgattgtacttatttatttatctaacaaatggggggaaattattcaaaaggtagaaaaaatgggtttgaaagtaat |
116 |
Q |
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| T |
37637736 |
catcattagcagcacacccaacaatgattgtacttatttatttatctaacaaatggggggaaattattcaaaaggtagaaaaa-tgggtttgaaagtaat |
37637638 |
T |
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| Q |
117 |
atccaacagataggagtctttttgctagtcgtcgtggagattactgcccctcgcaaagtgccgcaaacactggtagtcttcttttagtggtcggctgatt |
216 |
Q |
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| T |
37637637 |
atccaacagataggagtctttttgctagtcgtcatggagattactgcccctcgcaaagtgccgcaaacactggtagtcttcttttagtggtcggctgatt |
37637538 |
T |
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| Q |
217 |
gagaatgccaaaaatgtatgcatcaacttcc |
247 |
Q |
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| T |
37637537 |
gagaatgccaaaaatgtatgcatcaacttcc |
37637507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 242
Target Start/End: Original strand, 37813733 - 37813913
Alignment:
| Q |
63 |
taacaaatggggggaaattattcaaaaggtagaaa-aaatgggtttgaaagtaatatccaacagataggagtctttttgctagtcgtcgtggagattact |
161 |
Q |
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| T |
37813733 |
taacaaatgggagaaaattattcaaaagatagaaataaattgttttgaaagtaatatccaacagagaggagtctctttgcaagtcatcatggagattaat |
37813832 |
T |
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| Q |
162 |
gcccctcgcaaagtgccgcaaacactggtagtcttcttttagtggtcggctgattgagaatgccaaaaatgtatgcatcaa |
242 |
Q |
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| T |
37813833 |
gctccttgcaaaattcagcaaaaactggtagtcttcttttagtgttcggcttattgagaatgcggaaaatgtatgcatcaa |
37813913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 37647113 - 37646930
Alignment:
| Q |
63 |
taacaaatggggggaaattattcaaaaggtagaaa-aaatgggtttgaaagtaatatccaacagataggagtctttttgctagtcgtcgtggagattact |
161 |
Q |
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| T |
37647113 |
taacaaatgggagaaaattattcaaaagatagaaataaattgttttgaaagtaatatccaacagagaggagtctctttgcaagtcatcatggagattaat |
37647014 |
T |
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| Q |
162 |
gcccctcgcaaagtgccgcaaacactggtagtct---tcttttagtggtcggctgattgagaatgccaaaaatgtatgcatcaa |
242 |
Q |
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| T |
37647013 |
gctccttgcagaattcggcaaaaactggtagtcttcttcttttagtgttcggcttattgagaatgcggaaaatgtatgcatcaa |
37646930 |
T |
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