View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_high_14 (Length: 214)
Name: NF20396_high_14
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 16013524 - 16013445
Alignment:
| Q |
17 |
aaacataaaaaagaacaaaatttcatcaaatgggcaagaatgtaagatgacccagaaggctcaatcacaatcaaatgata |
96 |
Q |
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| T |
16013524 |
aaacataaaaaagaacaaaatttcatcaaatgggcaagaatgtaagatgacccagaaggctcaatcacaatcaaatgata |
16013445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 16013378 - 16013341
Alignment:
| Q |
162 |
catataatcaattaatgttttgtttctagcatatatat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
16013378 |
catataatcaattaatgttttgtttctagcatatatat |
16013341 |
T |
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