View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_high_5 (Length: 409)
Name: NF20396_high_5
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 4190089 - 4189713
Alignment:
| Q |
16 |
gttttcttctccagtttgtcactggaggcttggtaagtttaaattccacttatctagctcacatggcttagtcacttattaaatctacatgagttcaatg |
115 |
Q |
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| T |
4190089 |
gttttcttctccagtttgtcactggaggcttggtaagtttaaattccacttatctagctcacatggcttagtcacttattaattctacatgagttcaatg |
4189990 |
T |
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| Q |
116 |
tgccaaatatatttcattacaccataagtttcatatgcataaacatttatttgccttaatattatatacatccatcatactattatgtggaccatggtta |
215 |
Q |
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| T |
4189989 |
tgccaaatatatttcattacaccataagtttcatatgcataaacatttatttgccttaatattatatacatccatcatactattatgtggaccatggtta |
4189890 |
T |
|
| Q |
216 |
aaatttggtccaaattcataaactattgcagacataataaacggtcataattaatttctcagattattatggtgttcctatttgtattataaaatttaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4189889 |
aaatttggtccaaattcataaactattgcagacataataaacggtcataattaatttctcagattattatggtgttcctatttgtattataaaatttaaa |
4189790 |
T |
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| Q |
316 |
acaataaaaattgttaaatacaaattaaagtacattcatcataccaaactggtgtagtccgaacggtaaacagttca |
392 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
4189789 |
acaataaaaattgttaaatacaaattaaagtgcattcatcataccaaactggtgtagtccgaatgaaaaacagttca |
4189713 |
T |
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