View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20396_low_1 (Length: 811)

Name: NF20396_low_1
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20396_low_1
NF20396_low_1
[»] chr1 (8 HSPs)
chr1 (1-796)||(51455047-51455841)
chr1 (678-792)||(30206808-30206922)
chr1 (678-789)||(51480424-51480535)
chr1 (708-792)||(51497310-51497394)
chr1 (194-495)||(51479739-51480038)
chr1 (193-247)||(30207548-30207602)
chr1 (200-248)||(51496757-51496805)
chr1 (521-639)||(51480269-51480387)
[»] chr5 (3 HSPs)
chr5 (173-796)||(43160142-43160774)
chr5 (713-796)||(27396465-27396548)
chr5 (710-789)||(20868672-20868751)
[»] scaffold0020 (1 HSPs)
scaffold0020 (711-789)||(137353-137431)
[»] chr6 (2 HSPs)
chr6 (708-789)||(18085553-18085634)
chr6 (406-489)||(18079591-18079673)


Alignment Details
Target: chr1 (Bit Score: 727; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 727; E-Value: 0
Query Start/End: Original strand, 1 - 796
Target Start/End: Original strand, 51455047 - 51455841
Alignment:
Q  1 ttgtttaacttgcttcatcctatgttttgtcagtttgctctattgttttttaatatgccttgtttgataattgggatgtagaccgaagttattgcacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455047 ttgtttaacttgcttcatcctatgttttgtcagtttgctctattgttctttaatatgccttgtttgataattgggatgtagaccgaagttattgcacata 51455146  T
Q  101 ttacacgtttggactttggttgatgaaatattgatcaaactatgcttttttgctgcctcttgttaaggtatcctaaactgaaagagagtgatattgccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455147 ttacacgtttggactttggttgatgaaatattgatcaaactatgcttttttgctgcctcttgttaaggtatcctaaactgaaagagagtgatattgccaa 51455246  T
Q  201 ggcatgtcctgtgtgctgtgataattgcaattgtaaagcatgcttgcggtcttttaaactcatcgatgttagtgatccacccttccacgattaactattc 300  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455247 ggcatgtcctgtgtgctgtgataattgcaattgcaaagcatgcttgcggtcttttaaactcatcgatgttagtgatccacccttccacgattaactattc 51455346  T
Q  301 ttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggaggaggttgagtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455347 ttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggaggaggttgagtt 51455446  T
Q  401 ctctgagtatctgctgaaaggacttcttccacatttcagacggttggatgaagaacaactgattgagaaggaaagagaagccaagagacgaggtattcct 500  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51455447 ctctaagtatctgctgaaaggacttcttccacatttaagacggttggatgcagaacaaatgattgagaaggaaagagaagccaagagacgaggtattcct 51455546  T
Q  501 gtatagtcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaa 600  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455547 gtatagtcggagaaaatttgtagttttatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaa 51455646  T
Q  601 accggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatgcnnnnnnnnacttattctaatgctatatagctgt 700  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||| |||    
T  51455647 accggcggattattctaaagatgagcgtgtgttctggtaaagactgatttggtatattaatcaatgc-tttttttacttattctaatgctatatagttgt 51455745  T
Q  701 tgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 796  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51455746 tgacttcacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 51455841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 678 - 792
Target Start/End: Complemental strand, 30206922 - 30206808
Alignment:
Q  678 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 777  Q
    |||| ||||| |||||||| |  |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  30206922 ttatactaattctatatagttaatgacttaacactttttgtagtgacaactgcaaaacgtcaatatttgactaccacagaagctgtacaaaatgctcttt 30206823  T
Q  778 tgacctttgtctcct 792  Q
    |||| ||||||||||    
T  30206822 tgacatttgtctcct 30206808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 678 - 789
Target Start/End: Original strand, 51480424 - 51480535
Alignment:
Q  678 ttattctaatgctatatagctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttt 777  Q
    ||||||| || |||||| |||  ||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  51480424 ttattctgattctatattgctaatgatttaacactttttgtagtgacaactgcaaaacatcaatatttgactaccacagaagctgtacagaatgctcttt 51480523  T
Q  778 tgacctttgtct 789  Q
    | || |||||||    
T  51480524 taacatttgtct 51480535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 708 - 792
Target Start/End: Original strand, 51497310 - 51497394
Alignment:
Q  708 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcct 792  Q
    ||||||| |||||||| | ||||||||| |||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  51497310 acactttctgtagtgacatctgcaaaacctcaatattcgactaccacagaagctgtacaaaatgttcttttgacatttgtctcct 51497394  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 194 - 495
Target Start/End: Original strand, 51479739 - 51480038
Alignment:
Q  194 ttgccaaggcatgtcctgtgtgctgtgataattgcaattgtaaagcatgcttgcggtcttttaaactcatcgatgttagtgatccacccttccacgatta 293  Q
    ||||| |||||||||| |||||||||| |||||||||||| |||||||||||||| || | |  ||| ||| | || ||   ||| |||||  | |||||    
T  51479739 ttgccgaggcatgtccggtgtgctgtggtaattgcaattgcaaagcatgcttgcgatcatgtgcacttatcaaagtcagatctcccccctt-aaagatta 51479837  T
Q  294 actattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggctgaaaccatcaacgaggaggagg 393  Q
    ||||||| | |||||| | ||||||||| ||||||||| |   ||| ||||| |||| ||||||| ||    ||| | ||||||| |||| |  | |||     
T  51479838 actattcatgtgatttgt-tgtattctacatttgaaatgtgatcatctggttcactacaggaaattaaaacgaagacagaaaccaacaacaaccatgagt 51479936  T
Q  394 ttgagttctctgagtatctgctgaaaggacttcttccacatttcagacggttggatgaagaacaactgattgagaaggaaagagaagccaagagacgagg 493  Q
    | ||| ||||  ||||| || |||||| |||||||||| |||| ||||| ||||||||||||||| || | |||||||| | |||||| ||||||| |||    
T  51479937 tcgagctctccaagtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagagacaagg 51480036  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 30207602 - 30207548
Alignment:
Q  193 attgccaaggcatgtcctgtgtgctgtgataattgcaattgtaaagcatgcttgc 247  Q
    ||||||||||||||||| | |||||||| |||||||||||| |||||||||||||    
T  30207602 attgccaaggcatgtccagggtgctgtggtaattgcaattgcaaagcatgcttgc 30207548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 51496757 - 51496805
Alignment:
Q  200 aggcatgtcctgtgtgctgtgataattgcaattgtaaagcatgcttgcg 248  Q
    |||||||||| |||||||||| |||||||||||| ||||| ||||||||    
T  51496757 aggcatgtccagtgtgctgtggtaattgcaattgcaaagcttgcttgcg 51496805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 521 - 639
Target Start/End: Original strand, 51480269 - 51480387
Alignment:
Q  521 tagtttcatatatttttcattttataatttgattttgggatgtgaattacagggctctcactctcaaagctaaatataaaaccggcggattattctaaag 620  Q
    |||||||||||||||| || ||||||||||| |||||||| |   ||| ||||||||||||  || ||||||||  |||||   || |||||  |||||     
T  51480269 tagtttcatatattttccaatttataatttgcttttgggacgaacattgcagggctctcacattctaagctaaaagtaaaagtcgcagattaccctaaaa 51480368  T
Q  621 atgagcgtgtgttctggta 639  Q
    || ||||||||| ||||||    
T  51480369 ataagcgtgtgtactggta 51480387  T

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Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 173 - 796
Target Start/End: Original strand, 43160142 - 43160774
Alignment:
Q  173 ctaaactgaaagagagtgatattgccaaggcatgtcctgtgtgctgtgataattgcaattgtaaagcatgcttgcggtcttttaaactcatcgatgttag 272  Q
    ||||| ||||||| || ||| ||||| |||||||||||||||| ||| ||||||||||||||||||| ||||| || |||| |||||||||  ||||  |    
T  43160142 ctaaattgaaagaaagcgatgttgccgaggcatgtcctgtgtgttgtaataattgcaattgtaaagcgtgcttacgatcttctaaactcattaatgtcgg 43160241  T
Q  273 tgatccacccttccacga--ttaactattcttctgatttttctgtattctatatttgaaatctatccatttggtttactataggaaatgaagcgtaaggc 370  Q
    |||||| ||||||  | |  |||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||     
T  43160242 tgatcctcccttcttctacattaactattcttatgatttttctgtattgtatatttgaaatgtatccatctggtttactataggaaatgaagcataaggt 43160341  T
Q  371 tgaaaccatcaacgaggaggaggttgagttctctgagtatctgctgaaaggacttcttccacatttcagacggttggatgaagaacaactgattgagaag 470  Q
     ||||||| || | | ||||| |||||||||||  || || | ||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  43160342 cgaaaccaacagcaatgaggaagttgagttctcgaagaatattctgaaaggacttcttccacatttaagagggttggatgaagaacaaatgatttagaag 43160441  T
Q  471 gaaagagaagccaagagacgaggtattcctgtatagtcggagaaaatttgtagtttcatatatttttcattttataatttgattttgggatgtgaattac 570  Q
    |||||||||||||||| || |||||||||| ||||||| ||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43160442 gaaagagaagccaagatacaaggtattcctttatagtcagagatcatttttagttttatatatttttcattttataatttgattttgggatgtgaattac 43160541  T
Q  571 agg----gctctcactctcaaagctaaatataaaaccggcggattattctaaagatgagcgtgtgttctggtaaggactgatttggtatattaatcaatg 666  Q
    |||     ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43160542 aggcctctctctcactctcaatgctaaatataaaaccggcggattattctaaagatgcgcgtgtgttctggtaaggactgatttggtatattaatcaatg 43160641  T
Q  667 cnnnnnnnnacttattctaatgctatatag-----ctgttgacttcacactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagct 761  Q
             ||||| ||||||||| |||||      ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  43160642 -ttttctttactta-tctaatgctttatagtgacaatgttggcttcacactttttatagtgacaactgcaaaacatcaatatttgactaccgcagaagct 43160739  T
Q  762 gttcaaaatgctcttttgacctttgtctcctctgt 796  Q
    |  |||||||| ||||| |||||||||||||||||    
T  43160740 gcacaaaatgcccttttaacctttgtctcctctgt 43160774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 713 - 796
Target Start/End: Original strand, 27396465 - 27396548
Alignment:
Q  713 ttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtctcctctgt 796  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||||||  || |||| || |||||||||||||||||||||    
T  27396465 ttttgtagcgacaactgcaaaacatcaatatttgattaccacagaagctgcacagaatgttcctttgacctttgtctcctctgt 27396548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 710 - 789
Target Start/End: Complemental strand, 20868751 - 20868672
Alignment:
Q  710 actttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 789  Q
    |||||||||||||| |||||| | |  || ||||||||||||||| |||| ||| |||||||||||||||||||||||||    
T  20868751 actttttgtagtgacaactgccagagctcgatatttgactaccaccgaagttgtgcaaaatgctcttttgacctttgtct 20868672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 711 - 789
Target Start/End: Complemental strand, 137431 - 137353
Alignment:
Q  711 ctttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 789  Q
    ||||||||||||| |||||| |||  | ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  137431 ctttttgtagtgacaactgccaaagcttaatatttgactaccacagaagctgtacaaaatgctcttttgacctttgtct 137353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 708 - 789
Target Start/End: Original strand, 18085553 - 18085634
Alignment:
Q  708 acactttttgtagtgataactgcaaaacatcaatatttgactaccacagaagctgttcaaaatgctcttttgacctttgtct 789  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||  | ||||||||||| || |||||||    
T  18085553 acactttttgtagtgacaactgcaaaacatcaatattcgactaccacaggagctgtaaagaatgctcttttaacatttgtct 18085634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 489
Target Start/End: Original strand, 18079591 - 18079673
Alignment:
Q  406 agtatctgctgaaaggacttcttccacatttcagacggttggatgaagaacaactgattgagaaggaaagagaagccaagagac 489  Q
    ||||| ||||||||| |||||||||| |||| ||||| ||||||||||||||| || | |||||||| | || ||| |||||||    
T  18079591 agtatatgctgaaag-acttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggatatagcagcaaagagac 18079673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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