View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_low_11 (Length: 249)
Name: NF20396_low_11
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 41840899 - 41840659
Alignment:
| Q |
1 |
tctattgtgtgacttgttatgattaaagtcagnnnnnnnnattgatatgttgattaggattgattaatagtgacgatgtatatgagttaaatccaacatt |
100 |
Q |
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| T |
41840899 |
tctagtgtgtgacttgttatgattaaagtcagttttttttattgatatgttgtttaggattgattaatagtgacgttgtatatgagttaaatccaacatt |
41840800 |
T |
|
| Q |
101 |
taatagacggttatttgatgaggttttgtaatgtttgttgtagtggctcgtttcgatttttcttggggtgactccaaatatcaccaagagactctggaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
41840799 |
taatagacggttatttgatgaggttttgtaatgtttgttgtagtggctcgtttcgatttttcttggggtgactccgaatatcaccaagagactctggaaa |
41840700 |
T |
|
| Q |
201 |
atttgaaggctgctatcaaaacttctaagaagctctgtgct |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
41840699 |
atttgaaggctgctatcaaaacttctaagaagctctgtgct |
41840659 |
T |
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