View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20396_low_13 (Length: 239)

Name: NF20396_low_13
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20396_low_13
NF20396_low_13
[»] chr7 (12 HSPs)
chr7 (1-221)||(41841154-41841360)
chr7 (51-103)||(44391203-44391255)
chr7 (30-101)||(40491679-40491750)
chr7 (27-101)||(42752162-42752237)
chr7 (27-101)||(4228610-4228684)
chr7 (27-101)||(35105256-35105330)
chr7 (27-76)||(16079465-16079514)
chr7 (27-100)||(28070798-28070871)
chr7 (62-103)||(32683701-32683742)
chr7 (27-72)||(41788414-41788459)
chr7 (27-103)||(33936790-33936866)
chr7 (29-73)||(40422893-40422937)
[»] chr1 (10 HSPs)
chr1 (27-101)||(13344839-13344913)
chr1 (27-103)||(4347040-4347116)
chr1 (27-101)||(40352457-40352531)
chr1 (27-103)||(36447660-36447736)
chr1 (55-103)||(6041785-6041833)
chr1 (27-87)||(47085899-47085960)
chr1 (27-102)||(5268317-5268393)
chr1 (27-75)||(5930826-5930874)
chr1 (27-67)||(7335899-7335939)
chr1 (27-99)||(13905561-13905633)
[»] chr4 (19 HSPs)
chr4 (28-103)||(5835778-5835853)
chr4 (27-105)||(32812165-32812243)
chr4 (27-103)||(753205-753281)
chr4 (27-115)||(3950293-3950379)
chr4 (32-103)||(43868239-43868310)
chr4 (27-101)||(38740287-38740361)
chr4 (62-103)||(5025591-5025632)
chr4 (27-103)||(33560482-33560557)
chr4 (27-103)||(39000530-39000606)
chr4 (53-104)||(8283295-8283346)
chr4 (27-86)||(17898057-17898115)
chr4 (27-101)||(54488632-54488707)
chr4 (30-103)||(1455480-1455553)
chr4 (27-76)||(22699769-22699818)
chr4 (27-76)||(22980712-22980761)
chr4 (27-76)||(22994299-22994348)
chr4 (27-72)||(36150631-36150676)
chr4 (30-103)||(48575485-48575558)
chr4 (39-103)||(24364103-24364167)
[»] scaffold0793 (1 HSPs)
scaffold0793 (27-103)||(5155-5231)
[»] chr5 (4 HSPs)
chr5 (31-111)||(2868324-2868405)
chr5 (27-76)||(22811082-22811131)
chr5 (27-101)||(19784869-19784944)
chr5 (27-72)||(10957198-10957242)
[»] chr6 (8 HSPs)
chr6 (27-106)||(3605731-3605810)
chr6 (27-103)||(1499998-1500074)
chr6 (27-108)||(10054969-10055051)
chr6 (36-73)||(2234158-2234195)
chr6 (46-107)||(6885904-6885965)
chr6 (27-72)||(25208724-25208769)
chr6 (44-96)||(9043722-9043774)
chr6 (36-103)||(13428858-13428926)
[»] chr3 (14 HSPs)
chr3 (27-101)||(42644304-42644379)
chr3 (27-103)||(39657981-39658057)
chr3 (27-103)||(44225607-44225683)
chr3 (27-101)||(25181252-25181326)
chr3 (27-101)||(31766160-31766234)
chr3 (27-76)||(7012682-7012731)
chr3 (62-103)||(53078435-53078476)
chr3 (37-101)||(30958145-30958209)
chr3 (37-101)||(30973957-30974021)
chr3 (30-102)||(49158621-49158693)
chr3 (27-103)||(53567974-53568050)
chr3 (27-72)||(10852727-10852772)
chr3 (27-76)||(23918884-23918933)
chr3 (65-102)||(27825291-27825328)
[»] chr8 (13 HSPs)
chr8 (27-101)||(36779441-36779515)
chr8 (27-104)||(38715191-38715268)
chr8 (27-103)||(29970852-29970928)
chr8 (27-95)||(38516348-38516416)
chr8 (27-102)||(1836124-1836199)
chr8 (28-103)||(2031907-2031982)
chr8 (45-103)||(41408258-41408316)
chr8 (51-103)||(20169493-20169545)
chr8 (27-103)||(35550271-35550347)
chr8 (27-101)||(31246299-31246374)
chr8 (27-101)||(10368063-10368137)
chr8 (27-72)||(19649236-19649281)
chr8 (62-103)||(41891802-41891843)
[»] scaffold0172 (1 HSPs)
scaffold0172 (27-103)||(15240-15316)
[»] chr2 (13 HSPs)
chr2 (27-103)||(12110925-12111001)
chr2 (62-114)||(13238935-13238987)
chr2 (32-103)||(13475947-13476019)
chr2 (27-76)||(23359938-23359987)
chr2 (56-100)||(7630532-7630576)
chr2 (52-103)||(33502771-33502823)
chr2 (27-101)||(3853951-3854026)
chr2 (27-101)||(1763271-1763345)
chr2 (27-101)||(26806238-26806312)
chr2 (31-103)||(6767777-6767849)
chr2 (27-103)||(10618861-10618937)
chr2 (67-99)||(26627193-26627225)
chr2 (31-103)||(40704682-40704754)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41841154 - 41841360
Alignment:
Q  1 tctacagtgaaatttacctttcaactaacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||    
T  41841154 tctacagtgaaatttacctttcaactaacataaatcactttacattcaagtcactttcaagtaaaatcaatt--------------cattcaaaatcaat 41841239  T
Q  101 tttgtcactgtaaaaaccaaacatgcacttagactaagaaacaagaataatatatataccagacattccggctttgagacaagaagaaataacatcaact 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841240 tttgtcactgtaaaaaccaaacatgcacttagaataagaaacaagaataatatatataccagacattccggctttgagacaagaagaaataacatcaact 41841339  T
Q  201 gaacgagatttaggtcccaag 221  Q
    |||||||||||||||||||||    
T  41841340 gaacgagatttaggtcccaag 41841360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 44391203 - 44391255
Alignment:
Q  51 tcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||| || |||||||||||||||| ||| |||||||||||||| ||||||    
T  44391203 tcacttttaactaaaatcaattctacataatcaattcattcaaaataaatttt 44391255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 40491679 - 40491750
Alignment:
Q  30 ataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    |||||||||||||| ||||| ||||||| |   |||||||||| |||| ||| |||||| ||||||||||||    
T  40491679 ataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaatt 40491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 42752237 - 42752162
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattct-acaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||| || |||||||| ||||||| ||  |||||||||||| ||||||| |||||  ||||||||||||    
T  42752237 aacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaatt 42752162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 4228610 - 4228684
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||||| ||||||| ||||||| ||  |||||||||| |  ||||| ||||||  |||||||||||    
T  4228610 aacataaatcacttttcattcaactcacttttaatcaaaatcaattatgtaaaatcaattcaaccaaaatcaatt 4228684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 35105256 - 35105330
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||||| |||||||  ||||||||   | |||||||| || ||||| |||||| ||||||||||||    
T  35105256 aacataaatcacttttcattcaatccactttcatccagaatcaattttaaaaaatcaattcactcaaaatcaatt 35105330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 16079465 - 16079514
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||| ||||||| ||||||| ||  ||||||||||||||    
T  16079465 aacataaatcacttttcattcaactcactttaaaccaaaatcaattctac 16079514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 28070798 - 28070871
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaat 100  Q
    |||| ||| ||||| |||||||| ||| |||||  | ||||||||| |||||||| |||| |||||||||||||    
T  28070798 aacagaaaccacttgacattcaactcaatttcagttgaaatcaattttacaaaattaattaattcaaaatcaat 28070871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 32683701 - 32683742
Alignment:
Q  62 taaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||| ||| |||||| ||||||||||||||    
T  32683701 taaaatcaattctacataatcaattcaatcaaaatcaatttt 32683742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 41788414 - 41788459
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaatt 72  Q
    ||||||||||||||||| ||||| || ||||| |||||||||||||    
T  41788414 aacataaatcactttaccttcaattccctttctagtaaaatcaatt 41788459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 33936866 - 33936790
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||||||||||||||| | ||||| ||  ||||  |||||||| |||| |||||   |||||||||||||    
T  33936866 aacataaatcactttacattcaattaactttgaaccaaaagtaattctacgaaatcaattctaccaaaatcaatttt 33936790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 40422893 - 40422937
Alignment:
Q  29 cataaatcactttacattcaagtcactttcaagtaaaatcaattc 73  Q
    ||||||| ||||||||||||| | ||||| |||||||||||||||    
T  40422893 cataaattactttacattcaactaacttttaagtaaaatcaattc 40422937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 13344839 - 13344913
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||||||| ||||| ||||||| ||  ||||||||||||||||||| |||||| ||||||||||||    
T  13344839 aacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 4347040 - 4347116
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||||||||||||| |||||   |||||||||||||    
T  4347040 aacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattctaccaaaatcaatttt 4347116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 40352457 - 40352531
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    |||||||||||||||||||| || ||||||| ||  ||||||||||| ||||||| |||||  ||||||||||||    
T  40352457 aacataaatcactttacattaaactcacttttaaccaaaatcaattccacaaaatcaattctatcaaaatcaatt 40352531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 36447736 - 36447660
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||||  | || |||||||  |  ||||||||||||||||||| |||||| ||||||||||||||    
T  36447736 aacataaatcactttactcttaactcacttttgatcaaaatcaattctacaaaattaattcaatcaaaatcaatttt 36447660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 6041785 - 6041833
Alignment:
Q  55 tttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||| | |||||||| |||||||||||||| ||||||    
T  6041785 tttcaagtaaaatcaactttacaaaatcaattcattcaaaattaatttt 6041833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 47085899 - 47085960
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattcta-caaaataaattc 87  Q
    ||||||||||| || |||||||| ||||||| || |||||||||||||| |||||| |||||    
T  47085899 aacataaatcaattcacattcaactcacttttaattaaaatcaattctatcaaaatcaattc 47085960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 5268317 - 5268393
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattca-ttcaaaatcaattt 102  Q
    |||| |||||||||||||||||| ||||||| | | | |||||||| ||||| || | |||| ||||||||||||||    
T  5268317 aacaaaaatcactttacattcaactcacttttaggcagaatcaattttacaagatcagttcatttcaaaatcaattt 5268393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 5930826 - 5930874
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattcta 75  Q
    ||||||||||||||||||||||| | ||||| ||  |||||||||||||    
T  5930826 aacataaatcactttacattcaatttacttttaaccaaaatcaattcta 5930874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 7335939 - 7335899
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaat 67  Q
    ||||||||||||||||||||||| ||||||| || ||||||    
T  7335939 aacataaatcactttacattcaactcacttttaactaaaat 7335899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 13905633 - 13905561
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaa 99  Q
    |||||||| || || |||||||| || | ||||| |||||||| || ||||| || |||||||||||||||||    
T  13905633 aacataaaccaattcacattcaactcgcattcaactaaaatcagttttacaatatcaattcattcaaaatcaa 13905561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 5835778 - 5835853
Alignment:
Q  28 acataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||| ||||||| ||| ||| ||  ||||||||||||||||||| |||||| ||||||||||||||    
T  5835778 acataaatcacttttcattcaattcagttttaatcaaaatcaattctacaaaatcaattcaatcaaaatcaatttt 5835853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 32812243 - 32812165
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattttgt 105  Q
    |||||||| ||||||||| |||| |||||||||||| ||||||||| || ||||| || ||||||||| | ||||||||    
T  32812243 aacataaaccactttacactcaattcactttcaagtcaaatcaattgtataaaatcaactcattcaaacttaattttgt 32812165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 753205 - 753281
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaa-tcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||| |||||||||  |||| ||| |||||||| |||||| ||||||||| ||||||||||||||||||||    
T  753205 aacataaatcattttacattcgggtcatttt-aagtaaaaatcaattttacaaaatagattcattcaaaatcaatttt 753281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 3950379 - 3950293
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattttgtcactgtaaaa 115  Q
    ||||||||||||||  ||| ||| |||||| ||||||||  ||||| |||| |||||||||||||||||||| | ||||||||| ||||    
T  3950379 aacataaatcactt--catacaactcacttacaagtaaacccaattttacagaataaattcattcaaaatcattgttgtcactgcaaaa 3950293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 43868239 - 43868310
Alignment:
Q  32 aaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||| ||||| | ||||| || || ||| |||| |||||||| |||||||||||||||||||||    
T  43868239 aaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaatttt 43868310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 38740361 - 38740287
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    |||||||||||||| |  ||||| ||||||| |   |||||||||| |||||||| |||||||||||||||||||    
T  38740361 aacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 5025591 - 5025632
Alignment:
Q  62 taaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  5025591 taaaatcaattctacaaaatcaattcaatcaaaatcaatttt 5025632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 33560557 - 33560482
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||| || ||||||||||| |||||||||||  ||||| ||| ||| |||| |||||||||||||||| ||||    
T  33560557 aacataaaccaatttacattcaactcactttcaag-caaatccattttacgaaattaattcattcaaaatcattttt 33560482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 39000606 - 39000530
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||| |||  ||| |  ||||||| || |||| ||||||||||||||| |||||| ||||||||||||||    
T  39000606 aacataaatcattttttattaagctcacttttaactaaactcaattctacaaaatcaattcaatcaaaatcaatttt 39000530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 8283346 - 8283295
Alignment:
Q  53 actttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattttg 104  Q
    |||||||||| ||||||||| || ||| | ||||||||||||||||||||||    
T  8283346 actttcaagttaaatcaattttaaaaactcaattcattcaaaatcaattttg 8283295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 17898115 - 17898057
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaatt 86  Q
    ||||||||||||||||||||||| |||||||| || | |||||||| |||||||| ||||    
T  17898115 aacataaatcactttacattcaactcactttc-agcagaatcaattatacaaaatcaatt 17898057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 54488632 - 54488707
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattct-acaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||| || |||||||| ||||||| ||  |||||||||||| ||||||| |||||  ||||||||||||    
T  54488632 aacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaatt 54488707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 1455553 - 1455480
Alignment:
Q  30 ataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||||||||| || ||| ||| | ||  ||||| ||||||||||| |||||||||||  ||||||||    
T  1455553 ataaatcactttacattgaactcaattttaggtggaatcagttctacaaaatcaattcattcaagctcaatttt 1455480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 22699769 - 22699818
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||||||||||| | ||||| ||  ||||||||||||||    
T  22699769 aacataaatcactttacattcaacttacttttaaccaaaatcaattctac 22699818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 22980761 - 22980712
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||||||||||| | ||||| ||  ||||||||||||||    
T  22980761 aacataaatcactttacattcaacttacttttaaccaaaatcaattctac 22980712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 22994348 - 22994299
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||||||||||| | ||||| ||  ||||||||||||||    
T  22994348 aacataaatcactttacattcaacttacttttaaccaaaatcaattctac 22994299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 36150631 - 36150676
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaatt 72  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  36150631 aacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 48575485 - 48575558
Alignment:
Q  30 ataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||| || ||||||||||| ||| ||| |   |||||||||| |||||||| |||||||||||||| ||||||    
T  48575485 ataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaatttt 48575558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 24364167 - 24364103
Alignment:
Q  39 tttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||| ||||||| |   | |||||||| |||| ||| |||||||||||||||||||||    
T  24364167 tttacattcaaatcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttt 24364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 5155 - 5231
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagt-aaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||| ||||||||| ||||| ||| |||| |||||||||| ||||||||| ||||||||||||||||||||    
T  5155 aacataaatcattttacattcgagtca-ttttaagtaaaaatcaattttacaaaatagattcattcaaaatcaatttt 5231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 2868405 - 2868324
Alignment:
Q  31 taaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaa-ttttgtcactgt 111  Q
    ||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||    |||||||| ||||||||||||    
T  2868405 taaatcactttacattcaactcacttttaactaaaatcaattctacaaaattaattctactaaaatcaatttttgtcactgt 2868324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 22811082 - 22811131
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  22811082 aacataaatcactttacattcaactcacttttaaccaaaatcaattctac 22811131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 19784869 - 19784944
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattc-tacaaaataaattcattcaaaatcaatt 101  Q
    |||||||| |||||||||||||| ||||||| ||  |||||||||||  | ||||| |||||| ||||||||||||    
T  19784869 aacataaaccactttacattcaactcacttttaaccaaaatcaattcaaataaaatcaattcaatcaaaatcaatt 19784944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 10957242 - 10957198
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaatt 72  Q
    ||||||||||| ||||||||||||||||||| || |||||||||||    
T  10957242 aacataaatca-tttacattcaagtcacttttaactaaaatcaatt 10957198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 3605810 - 3605731
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattttgtc 106  Q
    ||||||||||||||| || |||| ||||||| ||  ||||||||||||||||||| ||||   |||||||||||||||||    
T  3605810 aacataaatcacttttcactcaactcacttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaattttgtc 3605731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 1499998 - 1500074
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||| |||||| |||| || |||| |   |||||||||| |||||||| |||||| ||||||||||||||    
T  1499998 aacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatttt 1500074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 10055051 - 10054969
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaa-ttttgtcac 108  Q
    |||||||| |||||||||  ||| ||| ||| || ||| ||||||| |||||||  ||||||||||||||||| |||||||||    
T  10055051 aacataaaccactttacaagcaactcaattttaactaatatcaattttacaaaaccaattcattcaaaatcaacttttgtcac 10054969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 2234195 - 2234158
Alignment:
Q  36 cactttacattcaagtcactttcaagtaaaatcaattc 73  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  2234195 cactttacattcaactcacttttaagtaaaatcaattc 2234158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 6885965 - 6885904
Alignment:
Q  46 tcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattttgtca 107  Q
    |||| ||||||| || |||||||| ||| ||||||| || ||||||| ||||||||||||||    
T  6885965 tcaactcacttttaattaaaatcagttcaacaaaatcaactcattcagaatcaattttgtca 6885904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 25208724 - 25208769
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaatt 72  Q
    ||||||||||| ||||||||||| ||||||| || |||||||||||    
T  25208724 aacataaatcattttacattcaactcacttttaattaaaatcaatt 25208769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 9043774 - 9043722
Alignment:
Q  44 attcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaat 96  Q
    |||||| ||||||| || ||||||||||| |||||||| |||||||| |||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaattcattaaaaat 9043722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 13428926 - 13428858
Alignment:
Q  36 cactttacattcaagtcactttcaagt-aaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||| ||||||| || | |||||||||| ||||||||  ||| ||||| ||||||||||    
T  13428926 cactttacattcaaatcacttttaactaaaaatcaattttacaaaattcatttattcacaatcaatttt 13428858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 42644304 - 42644379
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaa-ttctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||||||||||||| ||||||| || ||||||||| || || ||||| |||||| ||||||||||||    
T  42644304 aacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaatt 42644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 39658057 - 39657981
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||| | |||||||||||   ||||| |||||||||||||| |||| ||| |||| ||||||||||||||||    
T  39658057 aacataaattattttacattcaacgaacttttaagtaaaatcaattttacataatcaatttattcaaaatcaatttt 39657981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 44225607 - 44225683
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||||||| || ||||||| ||  ||||||||||||||||||| ||||   | ||||||||||||    
T  44225607 aacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaattatattaaaatcaatttt 44225683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 25181252 - 25181326
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||| | |||||||| || ||||||| ||  ||||||||||||||||||| |||||| |||| |||||||    
T  25181252 aacataaataattttacattaaactcacttttaatcaaaatcaattctacaaaatcaattcaatcaatatcaatt 25181326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 31766234 - 31766160
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||||||  ||||| ||||||| |   ||||| |||| |||||||| |||||||||||||||||||    
T  31766234 aacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 7012682 - 7012731
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  7012682 aacataaatcactttacattcaactcacttttaaccaaaatcaattctac 7012731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 53078435 - 53078476
Alignment:
Q  62 taaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||||||| |||||| ||||||||||||||    
T  53078435 taaaatcaattctacaaaattaattcaatcaaaatcaatttt 53078476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 30958145 - 30958209
Alignment:
Q  37 actttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||| |||| || |   |||||||||| |||||||| |||||||||||||||||||    
T  30958145 actttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 30973957 - 30974021
Alignment:
Q  37 actttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||| |||| || |   |||||||||| |||||||| |||||||||||||||||||    
T  30973957 actttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaatcaatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 49158621 - 49158693
Alignment:
Q  30 ataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattt 102  Q
    ||||||||  ||| |||| ||||||||| |  | ||||||||| |||||||| ||||||||||||||||||||    
T  49158621 ataaatcatcttatattctagtcacttttatcttaaatcaattttacaaaatcaattcattcaaaatcaattt 49158693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 53567974 - 53568050
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||| ||||| ||||||| ||||||| ||  |||||||||| |  ||||| |||||| ||||||||||||||    
T  53567974 aacataaattacttttcattcaactcacttttaatcaaaatcaattttgtaaaatcaattcactcaaaatcaatttt 53568050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 10852772 - 10852727
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaatt 72  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  10852772 aacataaatcactttacattcaactcacttttaaccaaaatcaatt 10852727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 23918884 - 23918933
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||||||||||| ||||||| ||  ||||| ||||||||    
T  23918884 aacataaatcactttacattcaactcacttttaaccaaaattaattctac 23918933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 27825328 - 27825291
Alignment:
Q  65 aatcaattctacaaaataaattcattcaaaatcaattt 102  Q
    |||||||| || ||||||||||||||||||||||||||    
T  27825328 aatcaattttataaaataaattcattcaaaatcaattt 27825291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 36779441 - 36779515
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||| ||||||||||||| ||||||| ||  ||||||||||||||||||| ||||   ||||||||||||    
T  36779441 aacataaattactttacattcaactcacttttaatcaaaatcaattctacaaaatcaattatatcaaaatcaatt 36779515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 38715268 - 38715191
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattttg 104  Q
    |||||||||||||||||| | || ||| ||| || ||||||||||||| |||||| |||||| | |||||||||||||    
T  38715268 aacataaatcactttacacttaactcaattttaactaaaatcaattctgcaaaatcaattcaattaaaatcaattttg 38715191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 29970852 - 29970928
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||| | |||| ||||||| || ||||||||||| |||||| | |||||  ||||||||||||||    
T  29970852 aacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaattctatcaaaatcaatttt 29970928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 38516348 - 38516416
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaa 95  Q
    ||||||||||||||||||||||| ||||| | |   ||||||||||||||||||| |||||| ||||||    
T  38516348 aacataaatcactttacattcaactcactattatcgaaaatcaattctacaaaatcaattcactcaaaa 38516416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 1836199 - 1836124
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaattt 102  Q
    ||||||||| |||| ||||||||  ||||||  | |||||||||||||||||||| |||| | |||||||||||||    
T  1836199 aacataaataacttcacattcaacccactttagattaaaatcaattctacaaaatcaatttaatcaaaatcaattt 1836124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 2031982 - 2031907
Alignment:
Q  28 acataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||  |||||||||| ||||  |||| || |||||| |||| |||||||||||||| |||||||||||||||    
T  2031982 acataaacaactttacatttaagtttcttttaaataaaataaattttacaaaataaattctttcaaaatcaatttt 2031907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 41408258 - 41408316
Alignment:
Q  45 ttcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||| ||||||  || |||||||||||||||||||| |||||| ||||||||||||||    
T  41408258 ttcaattcacttctaactaaaatcaattctacaaaattaattcaatcaaaatcaatttt 41408316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 20169493 - 20169545
Alignment:
Q  51 tcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||| || |||||||||||||||| ||| |||||||||||||| ||||||    
T  20169493 tcacttttaactaaaatcaattctacataatcaattcattcaaaataaatttt 20169545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 35550271 - 35550347
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||| ||||||||||||| | || |||||||  |  |||||||||| |||||||| |||||| ||||||||||||||    
T  35550271 aacaaaaatcactttacactaaactcacttttgataaaaatcaattttacaaaatcaattcaatcaaaatcaatttt 35550347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 31246374 - 31246299
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattct-acaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||| || |||||||| ||||||| ||  |||||||||||| ||||||| |||||  ||||||||||||    
T  31246374 aacataaatcaattcacattcaactcacttttaacaaaaatcaattctaacaaaatcaattctgtcaaaatcaatt 31246299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 10368063 - 10368137
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    |||| |||||||||||| ||||| ||||||| |   |||||||||| |||||||  |||||| ||||||||||||    
T  10368063 aacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatcaatt 10368137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 19649236 - 19649281
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaatt 72  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||||    
T  19649236 aacataaatcactttacattcaactcacttttaaccaaaatcaatt 19649281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 41891843 - 41891802
Alignment:
Q  62 taaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||||||| |||||| ||||||| ||||||    
T  41891843 taaaatcaattctacaaaatcaattcaatcaaaattaatttt 41891802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 15316 - 15240
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||| |||||| ||||||| ||  ||||||||||  ||||||| |||||  ||||||||||||||    
T  15316 aacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaatttt 15240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 12110925 - 12111001
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    |||||||||||||||| |||||| ||||||| ||  ||||||||||  ||||||| |||||  ||||||||||||||    
T  12110925 aacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaatttt 12111001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 13238935 - 13238987
Alignment:
Q  62 taaaatcaattctacaaaataaattcattcaaaatcaattttgtcactgtaaa 114  Q
    ||||||||||| |||||||| |||||| ||||||||||||||| |||||||||    
T  13238935 taaaatcaattttacaaaatgaattcaatcaaaatcaattttgccactgtaaa 13238987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 13475947 - 13476019
Alignment:
Q  32 aaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattc-attcaaaatcaatttt 103  Q
    |||||||||||||||||| ||||||  ||||||||||||||  ||||||| |||||  |||||||||||||||    
T  13475947 aaatcactttacattcaattcacttataagtaaaatcaatttaacaaaatcaattcgtttcaaaatcaatttt 13476019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 23359987 - 23359938
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctac 76  Q
    ||||||||||||||||||||||| ||||||| ||  ||||||||||||||    
T  23359987 aacataaatcactttacattcaactcacttttaaccaaaatcaattctac 23359938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 7630532 - 7630576
Alignment:
Q  56 ttcaagtaaaatcaattctacaaaataaattcattcaaaatcaat 100  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  7630532 ttcaactaaaatcaattttacaaaatcaattcattcaaaatcaat 7630576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 33502823 - 33502771
Alignment:
Q  52 cactttcaagtaaaatcaattctacaaaat-aaattcattcaaaatcaatttt 103  Q
    |||||| |||| ||||||||| |||||||| ||||||||||||||||||||||    
T  33502823 cacttttaagtgaaatcaattttacaaaatcaaattcattcaaaatcaatttt 33502771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 3853951 - 3854026
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattcta-caaaataaattcattcaaaatcaatt 101  Q
    ||||||||||| ||||||||||| ||||||| ||  ||||||||||||| |||||| |||||  ||||| ||||||    
T  3853951 aacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaatcaattccatcaaactcaatt 3854026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 1763271 - 1763345
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    |||||||||||||||| |||||| ||| ||| ||  |||||||||| |||||||| ||||   ||||||||||||    
T  1763271 aacataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaattttatcaaaatcaatt 1763345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 26806312 - 26806238
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatt 101  Q
    ||||||||||||||| || |||| ||||||| ||  ||||||||||||  ||||| ||||||  |||||||||||    
T  26806312 aacataaatcacttttcactcaactcacttttaatcaaaatcaattctgtaaaattaattcaaccaaaatcaatt 26806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 6767777 - 6767849
Alignment:
Q  31 taaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||||||||||||||| ||| ||| ||  | |||||||| |||||||| | || ||||||||||| ||||    
T  6767777 taaatcactttacattcaactcatttttaatcacaatcaattttacaaaatcagtttattcaaaatcattttt 6767849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 10618937 - 10618861
Alignment:
Q  27 aacataaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||| ||||||||| ||||| ||| ||| |  || |||||||| |||||||| |||||| | ||||||||||||    
T  10618937 aacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaatttt 10618861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 26627225 - 26627193
Alignment:
Q  67 tcaattctacaaaataaattcattcaaaatcaa 99  Q
    |||||| ||||||||||||||||||||||||||    
T  26627225 tcaattttacaaaataaattcattcaaaatcaa 26627193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 40704682 - 40704754
Alignment:
Q  31 taaatcactttacattcaagtcactttcaagtaaaatcaattctacaaaataaattcattcaaaatcaatttt 103  Q
    ||||||| ||||||||||| | | ||| ||  ||||||||||  ||| ||| |||||||||||||||||||||    
T  40704682 taaatcaatttacattcaaataaattttaaccaaaatcaatttcacataatcaattcattcaaaatcaatttt 40704754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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