View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_low_14 (Length: 239)
Name: NF20396_low_14
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 41490771 - 41490570
Alignment:
| Q |
23 |
gtaatcaggttgaatttgcaacggaggcatcatatgcagtttgtgcaacgtgtatttgctgagtatgagaatgcgaattatgagaagcttgtaacctcca |
122 |
Q |
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| T |
41490771 |
gtaatcaggtcgaatttgcaacggaggcatcatatgcagtttgtgcaacgtgtatttgcggagtatgagagtgcgaattacgagaagcttgtaacctcca |
41490672 |
T |
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| Q |
123 |
ttgaagctcatcccagcaaagcagttcaagaagtattgaagtcctttttggctaaaatttacaagagacaagcgtagatttccc-tgtaagacaaagacc |
221 |
Q |
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| T |
41490671 |
ttgaagctcatcccaacaaagcagttcaagaagtattgaagtcctttttggctaaaatttacaagagacaagcgtagatttcccttgtaagacaaagacc |
41490572 |
T |
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| Q |
222 |
aa |
223 |
Q |
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|| |
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| T |
41490571 |
aa |
41490570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 215
Target Start/End: Original strand, 9972488 - 9972632
Alignment:
| Q |
72 |
gtgtatttgctgagtatgagaatgcgaattatgagaagcttgtaacctccattgaagctcatcccagcaaagcagttcaagaagtattgaagtccttttt |
171 |
Q |
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| T |
9972488 |
gtgtatttgaggagtatgagagtacgagctatgagaagcttgtaacctctattgaagctcatcccagcaatgcagttcaagcagtattgaaatccttctt |
9972587 |
T |
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| Q |
172 |
ggctaaaatttacaagagacaagcgtagatttccc-tgtaagaca |
215 |
Q |
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| T |
9972588 |
ggctaaaatttacaagaggcaaaagtaaatttcccttgtaagaca |
9972632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 18663103 - 18663245
Alignment:
| Q |
85 |
gtatgagaatgcgaattatgagaa-gcttgtaacctccattgaagctcatcccagcaaagcagttcaagaag--tattgaagtcctttttggctaaaatt |
181 |
Q |
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|||||||| ||| | ||||||||| ||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |
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| T |
18663103 |
gtatgagagtgcaagttatgagaaagcttgtagcctccattgaaactcatcccagcaaagaagttcaagaagtatattgaagtccttcttggctaaaatt |
18663202 |
T |
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| Q |
182 |
tacaagagacaagcgtagatttccc-tgtaagacaaagaccaa |
223 |
Q |
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| T |
18663203 |
tacaagaggcagaagtagatttcccttgtaagacaaagaccaa |
18663245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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