View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_low_2 (Length: 687)
Name: NF20396_low_2
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_low_2 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 666
Target Start/End: Complemental strand, 34694534 - 34693868
Alignment:
| Q |
1 |
acgtatcttcttaatctcatctctacgtggattcgttgtccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
34694534 |
acgtatcttcttaatctcatctctacgtggattcgtcgtccctgagttatagatggcttcaagaatgtggatttgctcaggttttgggatccatcttggc |
34694435 |
T |
|
| Q |
101 |
cttggtccaggagttatttcttcatcatctccacctaaaaaatatttgtcgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34694434 |
cttggtccaggagttatttcttcatcatctccacctaaaaaatatttgtcgtaagccgatcaaacatgcaaagtttacaaattataaaattgaccgaaag |
34694335 |
T |
|
| Q |
201 |
atattcattacactgtatgaaccatggagtattatgatatttccataactaattttttatgggttagatttgcttgaatgtgtgaataaggtcagaccat |
300 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694334 |
atattcattacattgtatgaaccatggagtattatgatatttctataactaattttttatgggttagatttgcttgaatgtgtgaataaggtcagaccat |
34694235 |
T |
|
| Q |
301 |
cggaaaagatcaaataattgacacagtgtgaatttaggaaacattacttgcattcaaatcctaaatttacattgtcaagcaaatatggtcagaccattgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34694234 |
cggaaaagatcaaataattgacacagtgtgaatttaggaaacattccttgcattcaaatcctaaatttacattgtcaagcaaatatggtcagaccattgg |
34694135 |
T |
|
| Q |
401 |
aaaagatcaaatagttgatgttagatttaggcttttacannnnnnnaaagccaagattaatctttttaaagctaggattagaaaagatcaaatagtagag |
500 |
Q |
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| T |
34694134 |
aaaagatcaaatagttgatgttagatttaggcttttacatttttttaaagctaagattaatctttttaaagctaggattagaaaagatcatatagtagag |
34694035 |
T |
|
| Q |
501 |
atcagatttgtttggtttgccgttnnnnnnnngatttgattggtttgattcctttatatgacacccaacttggnnnnnnnntcaaatccatatataactt |
600 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
34694034 |
gtcagatttgtttggtttgccgttaaaaaaaagatttgattggtttgattcctttatatgacacccaacttggaaaaaaaatcaaatccatatataattt |
34693935 |
T |
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| Q |
601 |
gtttcgattggaattatgagtttgtatagtcattgattttgatctttcatacaaa-tatacatgtca |
666 |
Q |
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| T |
34693934 |
gtttcgattggaattatgagtttgtatagtcattgattttgatctttcatacaaattatacatgtca |
34693868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 34686601 - 34686324
Alignment:
| Q |
2 |
cgtatcttcttaatctcatctctacgtggattcgttgtccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtc |
101 |
Q |
| |
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||||||||||| || |||||| | |||||||| | |||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
34686601 |
cgtatcttcttgatttcatctacaggtggattcttcatccctgagttgtagatggcttcaagaatgcggatttgctcaggctttggaatccatcttggcc |
34686502 |
T |
|
| Q |
102 |
ttggtccaggagttatttcttcatcatctccacctaaaaaatatttgtcgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaaga |
201 |
Q |
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||||||||||| || | |||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| ||| | |
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| T |
34686501 |
ttggtccaggatttctatcttcatcg------cctaaacaatatttgttataagccgatcaaacatgcaaagtttacaaattattaaattgaccaaaata |
34686408 |
T |
|
| Q |
202 |
tattcattacactgtatgaaccatggagtattatgatatttccataactaattttttatgggttagatttgcttgaatgtgtgaat |
287 |
Q |
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||| ||||||||| |||||| |||| ||||||||||||||| | ||||| |||||||||||||| | |||||||||||||||||| |
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| T |
34686407 |
tatgcattacactctatgaagcatg--gtattatgatatttctagaactatttttttatgggttatagttgcttgaatgtgtgaat |
34686324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 326 - 436
Target Start/End: Complemental strand, 34686331 - 34686221
Alignment:
| Q |
326 |
gtgtgaatttaggaaacattacttgcattcaaatcctaaatttacattgtcaagcaaatatggtcagaccattggaaaagatcaaatagttgatgttaga |
425 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34686331 |
gtgtgaatttaggaaatcttacttgcattgaaatcctaaatttacattgtcgagcaaatatggtcagaccattagaaaagatcaaatagttgatgttaga |
34686232 |
T |
|
| Q |
426 |
tttaggctttt |
436 |
Q |
| |
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| T |
34686231 |
tttaggctttt |
34686221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 664
Target Start/End: Complemental strand, 34686115 - 34686043
Alignment:
| Q |
592 |
atataacttgtttcgattggaattatgagtttgtatagtcattgattttgatctttcatacaaatatacatgt |
664 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||| |||| |
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| T |
34686115 |
atataatttgtttcgattggaattttgagtttgtagagtagttgattttgatctttcatacaaacataaatgt |
34686043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 464 - 519
Target Start/End: Complemental strand, 34686214 - 34686158
Alignment:
| Q |
464 |
ttttaaagctaggattagaaaagatcaaatagt-agagatcagatttgtttggtttg |
519 |
Q |
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||||||||||| |||||||||| |||||||||| | |||||| |||| ||||||||| |
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| T |
34686214 |
ttttaaagctaagattagaaaaaatcaaatagtaaaagatcatatttttttggtttg |
34686158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 8284422 - 8284213
Alignment:
| Q |
39 |
tccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtcttggtccaggagttatttcttcatcatctccacctaa |
138 |
Q |
| |
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|||||||||| | ||||||| |||||||| ||||| | ||||||||| |||||||||| ||||| | |||||| | ||||| ||||||||||||| |
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| T |
8284422 |
tccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttggttctggagttctctcttcgccatctccacctaa |
8284323 |
T |
|
| Q |
139 |
aaaatatttgtcgtaagccgatcaaacatgtaaagtttacaaattataaaattgaccgaaagatattcattacactgtatgaaccatggagtattatgat |
238 |
Q |
| |
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| ||||||||| |||| | ||| |||||| ||||||||||||| ||||||| || | |||| ||||||| | ||||| ||| | ||||||||||||| |
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| T |
8284322 |
acaatatttgttataagtcaatcgaacatgctaagtttacaaattctaaaatttactaatagatgttcattatattgtataaactagggagtattatgat |
8284223 |
T |
|
| Q |
239 |
atttccataa |
248 |
Q |
| |
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||||| |||| |
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| T |
8284222 |
atttctataa |
8284213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 5768 - 5623
Alignment:
| Q |
3 |
gtatcttcttaatctcatctctacgtggattcgttgtccctgagttatagatggcttgaagaatgcggatttgctcaggttttgggatccatcttggtct |
102 |
Q |
| |
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||||||| |||||||||||||| |||||||| |||||||||| ||| | ||| |||||||||||||||||| | ||||| |||||||||| || |
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| T |
5768 |
gtatcttattaatctcatctctttgtggattcaccatccctgagttgaagaggacttcgagaatgcggatttgctcaagctttggattccatcttgg-ct |
5670 |
T |
|
| Q |
103 |
tggtccaggagttatttcttcatcatctccacctaaaaaatatttgt |
149 |
Q |
| |
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| || || |||| | |||||| |||||||||||||| ||||||||| |
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| T |
5669 |
ttgttgagaagttctctcttcagcatctccacctaaacaatatttgt |
5623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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