View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20396_low_3 (Length: 601)

Name: NF20396_low_3
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20396_low_3
NF20396_low_3
[»] chr4 (5 HSPs)
chr4 (243-583)||(29723650-29723990)
chr4 (11-194)||(29723963-29724140)
chr4 (490-583)||(3025002-3025095)
chr4 (338-423)||(3025103-3025188)
chr4 (165-205)||(3025357-3025397)
[»] chr5 (15 HSPs)
chr5 (77-225)||(37129546-37129697)
chr5 (154-214)||(37136782-37136842)
chr5 (490-583)||(38745704-38745797)
chr5 (490-582)||(37162679-37162771)
chr5 (50-195)||(35145021-35145169)
chr5 (490-582)||(37129939-37130031)
chr5 (44-163)||(37143799-37143918)
chr5 (163-226)||(37162378-37162441)
chr5 (490-580)||(35144371-35144461)
chr5 (165-205)||(38745419-38745459)
chr5 (490-581)||(37144237-37144328)
chr5 (344-397)||(38745617-38745670)
chr5 (490-582)||(37137095-37137187)
chr5 (77-164)||(37162277-37162364)
chr5 (163-211)||(37143933-37143981)


Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 243 - 583
Target Start/End: Complemental strand, 29723990 - 29723650
Alignment:
Q  243 gttgcatagagaaggagacatgctctccatgatgccttatgttgcatcagcgacagttccacaacagttgagattccctgacctccaaggttcatttgat 342  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29723990 gttgcatagagaaggagacatgctctccatgatgccttatgttgcatcagcgacagatccacaacagttgagattccctgacctccaaggttcatttgat 29723891  T
Q  343 ggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctcttggaagtcaagatcatttg 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29723890 ggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctcttggaagtcaagatcatttg 29723791  T
Q  443 gaattcttccgccatccaacgaaccttagagaacagctccacaacagttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatga 542  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29723790 gaattcttccgccatccaacgaaccttagagaacagctccacaatagttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatga 29723691  T
Q  543 tcttgttcgcctttcacagttgcaatatcttgatctttcag 583  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29723690 tcttgttcgcctttcacagttgcaatatcttgatctttcag 29723650  T

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Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 29724140 - 29723963
Alignment:
Q  11 gtgagaagaaataataataataagttgaaagcaaagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29724140 gtgagaagaaataataataataagttgaaagcaaagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgt 29724041  T
Q  111 tggagattctcttatccaactgttgtggagctatagcttatgcaaaacatgttggttgcatagagaaggagagacatgctctcc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    ||||||||||||||  ||||||||||||||    
T  29724040 tggagattctcttatccaactgttgtggagctatagcttatgccaaacat----gttgcatagagaag--gagacatgctctcc 29723963  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 490 - 583
Target Start/End: Complemental strand, 3025095 - 3025002
Alignment:
Q  490 ttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttcag 583  Q
    |||||| | ||||| |||||||||||||||||||  ||||||| |||||| ||||||| ||| ||||| || ||||||||||||||||||||||    
T  3025095 ttgagatttcttgatctccaaggttcatttgatgggggaagaattccaaaggatcttgctcgtctttcgcacttgcaatatcttgatctttcag 3025002  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 3025188 - 3025103
Alignment:
Q  338 ttgatggagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagtatttttccagatatttttggttctct 423  Q
    ||||| |||||||||| |||||||||| ||||||||||||||| || |||| ||||||||  ||| |||||  | |||||||||||    
T  3025188 ttgatcgagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagttatttcccagaattatttggttctct 3025103  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 3025397 - 3025357
Alignment:
Q  165 gttgcatagagaaggagagacatgctctccttgaattgaag 205  Q
    |||||||||||||||||||||| || |||||||| ||||||    
T  3025397 gttgcatagagaaggagagacaagcactccttgagttgaag 3025357  T

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Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 37129546 - 37129697
Alignment:
Q  77 aagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagcttatgc---aaaacatgttggttgcatag 173  Q
    |||||||||||| |||||||||||||||||| ||| ||  |||| || |||||||  | ||||| | |||||  |||   ||||||||||| |||||||     
T  37129546 aagttagttggaacaatctttgttgtgttgcagttcgaccttcttttctccaactactctggagttgtagctgttgcggcaaaacatgttgcttgcatac 37129645  T
Q  174 agaaggagagacatgctctccttgaattgaaggcaagccttatgttcgatga 225  Q
    ||||||||||||||||||||||||| |||||||||||| || |||| |||||    
T  37129646 agaaggagagacatgctctccttgagttgaaggcaagctttgtgttggatga 37129697  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 37136782 - 37136842
Alignment:
Q  154 aaaacatgttggttgcatagagaaggagagacatgctctccttgaattgaaggcaagcctt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37136782 aaaacatgttggttgcatagagaaggagagacatgctctccttgagttgaaggcaagcctt 37136842  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 490 - 583
Target Start/End: Original strand, 38745704 - 38745797
Alignment:
Q  490 ttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttcag 583  Q
    |||||| | |||||||||||||||||||||||||  ||||||| |||||| ||||||| ||| ||||| || ||||||||||||||||||||||    
T  38745704 ttgagatttcttgacctccaaggttcatttgatgggggaagaattccaaaggatcttgctcgtctttcgcacttgcaatatcttgatctttcag 38745797  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 490 - 582
Target Start/End: Original strand, 37162679 - 37162771
Alignment:
Q  490 ttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttca 582  Q
    |||||| |||||||||||||| |||||||| |||  ||||||| |||||||||||||  ||| ||||| || |||||||||||||||||||||    
T  37162679 ttgagattccttgacctccaaagttcattttatggaggaagaattccaaatgatctttctcgtctttcgcacttgcaatatcttgatctttca 37162771  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 195
Target Start/End: Complemental strand, 35145169 - 35145021
Alignment:
Q  50 aagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagctt 149  Q
    ||||||||||||| ||||| |||| |||||||||||||| |||||| |||  |||||| ||| ||| |||| || ||||||| |||||||| | |||       
T  35145169 aagatgatgagtactgttgggtctatgaagttagttggaacaatctatgtattgttgcagttagagcttcttttgtccaactattgtggagttgtag--- 35145073  T
Q  150 atgcaaaacatgtt------ggttgcatagagaaggagagacatgctctcct 195  Q
     |||||||||||||      ||||||||||||||||||||||||| ||||||    
T  35145072 ttgcaaaacatgttggtttaggttgcatagagaaggagagacatggtctcct 35145021  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 490 - 582
Target Start/End: Original strand, 37129939 - 37130031
Alignment:
Q  490 ttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttca 582  Q
    |||||| |||||||||||||| ||||||||  || |||||||| ||||||||||||||  || ||||  || |||||||||||||||||||||    
T  37129939 ttgagattccttgacctccaaagttcatttcgtggcggaagaattccaaatgatcttgcacgtcttttgcacttgcaatatcttgatctttca 37130031  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 37143799 - 37143918
Alignment:
Q  44 aagattaagatgatgagtagtgttgtgtctctgaagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagcta 143  Q
    ||||| ||||||||||| |  ||||| ||| | ||||||||||||||||||||| |||||||||  || | ||||||||| ||||||| || |||||||     
T  37143799 aagatgaagatgatgagcaccgttgtttctatcaagttagttggagcaatctttattgtgttgcaatttgcgattctcttgtccaactattctggagctg 37143898  T
Q  144 tagcttatgcaaaacatgtt 163  Q
    |||||  ||||||| |||||    
T  37143899 tagctgctgcaaaaaatgtt 37143918  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 37162378 - 37162441
Alignment:
Q  163 tggttgcatagagaaggagagacatgctctccttgaattgaaggcaagccttatgttcgatgat 226  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||    
T  37162378 tggttgtatagagaaggagagacatgctctccttgagttgaaggccagccttgtgttggatgat 37162441  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 490 - 580
Target Start/End: Complemental strand, 35144461 - 35144371
Alignment:
Q  490 ttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatcttt 580  Q
    |||||| ||||||||||||||| ||| ||| || | ||||||| ||||||||||||||   | |||||||| |||||||||||||||||||    
T  35144461 ttgagattccttgacctccaagcttcgtttcatcatggaagaattccaaatgatcttgcctgtctttcacacttgcaatatcttgatcttt 35144371  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 38745419 - 38745459
Alignment:
Q  165 gttgcatagagaaggagagacatgctctccttgaattgaag 205  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  38745419 gttgcatagagaaggagagacatgctctccttgagttgaag 38745459  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 490 - 581
Target Start/End: Original strand, 37144237 - 37144328
Alignment:
Q  490 ttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttc 581  Q
    |||||| ||||||||||||| | |||||||||||  ||||||| ||||||| |||||| ||| ||||  || || |||||||||||| ||||    
T  37144237 ttgagattccttgacctccatgcttcatttgatggaggaagaattccaaataatcttgctcgtcttttgcatttacaatatcttgatatttc 37144328  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 344 - 397
Target Start/End: Original strand, 38745617 - 38745670
Alignment:
Q  344 gagttgcggcctttaaagtatctgaacctcagttggagtcggtttccaaacagt 397  Q
    |||||||||| |||||||||| ||||||||||||||| || |||| ||||||||    
T  38745617 gagttgcggcatttaaagtatttgaacctcagttggaatctgttttcaaacagt 38745670  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 582
Target Start/End: Original strand, 37137095 - 37137187
Alignment:
Q  490 ttgagactccttgacctccaaggttcatttgatgacggaagaaatccaaatgatcttgttcgcctttcacagttgcaatatcttgatctttca 582  Q
    |||||| ||||||||||| ||| |||||    || |||||||| |||||||||||||| ||  || || || |||||||||||||||||||||    
T  37137095 ttgagattccttgacctcaaagcttcatactctggcggaagaattccaaatgatcttgctcatctgtcgcacttgcaatatcttgatctttca 37137187  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 37162277 - 37162364
Alignment:
Q  77 aagttagttggagcaatctttgttgtgttgctgttggagattctcttatccaactgttgtggagctatagcttatgcaaaacatgttg 164  Q
    |||||||||||||||||||||||| |||||| ||| |   |||| || ||||||| || ||||||| | | | |||||||||||||||    
T  37162277 aagttagttggagcaatctttgttctgttgcagttcggctttcttttgtccaactattatggagctgtggttgatgcaaaacatgttg 37162364  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 37143933 - 37143981
Alignment:
Q  163 tggttgcatagagaaggagagacatgctctccttgaattgaaggcaagc 211  Q
    |||||||| |||||| ||||||||||||||||||||  |||||| ||||    
T  37143933 tggttgcaaagagaatgagagacatgctctccttgagctgaaggaaagc 37143981  T

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