View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_low_4 (Length: 487)
Name: NF20396_low_4
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 82886 - 82418
Alignment:
| Q |
1 |
tgcaagagttgatgaggagaggcgttatgtgcaagggactggaattgtttatgaatagctcgcgtgcctcctaaagttcgtaattggatgtggcggattt |
100 |
Q |
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| T |
82886 |
tgcaagagttgatgaggagaggcgttatgtgcaagggactggaattgtttatgaatagctcgcgtgcctcctaaagttcgtaattggatgtggcggattt |
82787 |
T |
|
| Q |
101 |
gtagaaaaggtgtttaccaaagagagagattacaggagcgtcatgttccatgttcgagcaattgcgagtgatgtgatgggctggtatagagaatgattgg |
200 |
Q |
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| T |
82786 |
gtagaaaaggtgtttactgaagagagagattacaggagcgtcatgttccatgttcgagcaattgcgagtgatgtgatgggctggtatagagaatgatcgg |
82687 |
T |
|
| Q |
201 |
catgtattttttcaatgcacgaatagtatagattgttcgaataatgcaggtttgtcacaaattattcaggcccgtctgcaacagtttgattcggttggag |
300 |
Q |
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| T |
82686 |
catgtattttttcaatgcacgaacagtatagattgttcgaataatgcaggtttgtcacaaattattcaggcccgtctgcaacagtttgattcggttggag |
82587 |
T |
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| Q |
301 |
aagttttgctagatgtgtgtgcccgtgagcaggatgagattgttagccatgtgttgatgttggtttggagtatacggaggaactgaatgattgtacttgg |
400 |
Q |
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| T |
82586 |
aagttttgctagatgtgtgtggccgtgagcaggatgagattgttagccatgtgttgatgttggtttggagtatacggaggaactgaatgattgtacttgg |
82487 |
T |
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| Q |
401 |
aatcagaaacaagtaaatccaactcagataatgagcatgtcgcaaaccatgctgacagaatggcaatcg |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
82486 |
aatcagaaacaagtaaatccaactcagataatgagcatgttgcaaaccatgctgacagaatggcaatcg |
82418 |
T |
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