View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20396_low_5 (Length: 454)
Name: NF20396_low_5
Description: NF20396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20396_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 1030789 - 1030358
Alignment:
| Q |
1 |
cagattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatctaaataatttcca |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030789 |
cagattccaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatctaaataatttcca |
1030690 |
T |
|
| Q |
101 |
ataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030689 |
ataaatattgcctaacatttcgctatcatatgtccaatttta---gaaccacaa--tttgcaccaatttgatccatgcaaccgtattagactttagaaaa |
1030595 |
T |
|
| Q |
201 |
aactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgcaccgtaaaacagctatagaggacccaaacttgctatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
1030594 |
aactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgccccgtaaaatggctatagaggacccaaacttgctatct |
1030495 |
T |
|
| Q |
301 |
gacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1030494 |
gacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctaatccacctaactgcatcttcctttgaaacctcat |
1030395 |
T |
|
| Q |
401 |
tttctttagatacaatttcctcaaaagctgatgttac |
437 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1030394 |
tttctttagatacaatttcctcaaaagctgatgttac |
1030358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 316 - 437
Target Start/End: Complemental strand, 40833072 - 40832951
Alignment:
| Q |
316 |
tctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaa |
415 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40833072 |
tctcaagaccatgcttcaatgtgatatttaccacacttttctaatgccctaatccatctaactgcatcttcttttgaaacatcattttctttagatacaa |
40832973 |
T |
|
| Q |
416 |
tttcctcaaaagctgatgttac |
437 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40832972 |
tttcctcaaaagctgatgttac |
40832951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 40833351 - 40833124
Alignment:
| Q |
2 |
agattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggc-----------aactacatgtattaataatctaa |
90 |
Q |
| |
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|||||| |||||||||| || ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||| | ||| ||||||| |
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| T |
40833351 |
agattccaacattcttcgtagaccaaggaagcaagtatttacaatgtataaatagaataataaagctcactttcttaaaccacatgaaataacaatctaa |
40833252 |
T |
|
| Q |
91 |
ataatttccaataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattaga |
190 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| ||| | | | || |||| |
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| T |
40833251 |
ataatttccaataaataccggctaacatacccctatcaaatgtccaattttg---gaaccacaaaatttgcaccaatttgatacattccatcatactaga |
40833155 |
T |
|
| Q |
191 |
ctttagaaaaaactgtatgattggacctcct |
221 |
Q |
| |
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||||| |||||||||||| |||||||||||| |
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| T |
40833154 |
ctttaaaaaaaactgtattattggacctcct |
40833124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 136 - 437
Target Start/End: Complemental strand, 46554249 - 46553948
Alignment:
| Q |
136 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggac |
235 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554249 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggac |
46554150 |
T |
|
| Q |
236 |
cctctacaaccgtctgcagacagttgcaccgtaaaacagctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaat |
335 |
Q |
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|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554149 |
cctctacaaccgtctgcagacagttgctccgtaaaatggctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaat |
46554050 |
T |
|
| Q |
336 |
gtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgtt |
435 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554049 |
gtgatatttaccgcacctttctaatgccctaatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgtt |
46553950 |
T |
|
| Q |
436 |
ac |
437 |
Q |
| |
|
|| |
|
|
| T |
46553949 |
ac |
46553948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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