View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20397_high_1 (Length: 881)
Name: NF20397_high_1
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 675; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 150 - 864
Target Start/End: Original strand, 38937552 - 38938266
Alignment:
| Q |
150 |
ggagttgcaaagaagttaactcagtccaattagagatcagtgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagt |
249 |
Q |
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|||||||||| |||||||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937552 |
ggagttgcaaggaagttaacttggtccaattagataccaatgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagt |
38937651 |
T |
|
| Q |
250 |
caaatttgctaatgacaaaggcaaagaacctgtcaggttatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaacttta |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937652 |
caaatttgctaatgacaaaggcaaagaacctgtcaggttatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaacttta |
38937751 |
T |
|
| Q |
350 |
gagttcaaaaagttagcactgagatcaagatgcaccaactcctttagttgacctatggaagaaggaatttccccatgagctgaaatgttgttcagctcaa |
449 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937752 |
gagttcaaaaagttagcactgagatcaagatgcactaactcctttagttgacctatggaagaaggaatttccccatgagctgaaatgttgttcagctcaa |
38937851 |
T |
|
| Q |
450 |
gaaattgatgcttagatatcaatcctatctctgttggaatatgactattaaacatgttattaccaatgcgaagatctttgagattcgagagaaaggacaa |
549 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38937852 |
gaaattgaagcttagatatcaatcctatctctgttggaatatgactattaaacatgttattaccaatgcgaagatctttgagattcgagagaagggacaa |
38937951 |
T |
|
| Q |
550 |
gttggatgatagtgttccttttagtccacagttggtgaggttgagatattcaagcattcctaaattaccataaaggaattctggtatggtaccattccaa |
649 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38937952 |
gttggatgatagtgttccttctagtccacagttggtgaggttgagatattcaagcattcctaaattaccataaaggaattctggtatggtaccattccaa |
38938051 |
T |
|
| Q |
650 |
ctgttctcagagaggtcaagatatgttaaattcttgcactcatgtatgaaacttggaatgtcaccagtgaattcattttcctccaaaccaaggtaattta |
749 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38938052 |
ctgttctcagagaggtcaagatatgttaaattcttgcactcatgtatgaaacttggaatgtcaccagtgaattcattttcctccaaaccaaggtaattta |
38938151 |
T |
|
| Q |
750 |
atgaaagcatgtttgaatattgagaccaatcaacggaagatacaaaaaagtttgatccaagatcaaggtaacttaccttggagagattagtgagctgata |
849 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38938152 |
atgaaagcatgtttgaatattgagaccaatcaacggaagatacaaaaaagtttgatccaagatcaaggtaacttaccttggagagattagtgagctgata |
38938251 |
T |
|
| Q |
850 |
gggaatggtaccatt |
864 |
Q |
| |
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||||||||||||||| |
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| T |
38938252 |
gggaatggtaccatt |
38938266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 150 - 373
Target Start/End: Complemental strand, 39305400 - 39305177
Alignment:
| Q |
150 |
ggagttgcaaagaagttaactcagtccaattagagatcagtgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagt |
249 |
Q |
| |
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|||||||||| |||||||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305400 |
ggagttgcaaggaagttaacttggtccaattagataccaatgaagctgaaatttgaccagaaaaagaattatccgataatcctagttctgatagtttagt |
39305301 |
T |
|
| Q |
250 |
caaatttgctaatgacaaaggcaaagaacctgtcaggttatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaacttta |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39305300 |
caaatttgctaatgacaaaggcaaagaacctgtcaggttatttactgctaagctcaagaaagttagatttgtgcataggccaagctcagaaggaacttta |
39305201 |
T |
|
| Q |
350 |
gagttcaaaaagttagcactgaga |
373 |
Q |
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|||||||||||||||||||||||| |
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| T |
39305200 |
gagttcaaaaagttagcactgaga |
39305177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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