View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20397_high_2 (Length: 614)

Name: NF20397_high_2
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20397_high_2
NF20397_high_2
[»] chr7 (5 HSPs)
chr7 (17-165)||(27658121-27658269)
chr7 (504-595)||(33602264-33602355)
chr7 (325-438)||(33602421-33602528)
chr7 (243-302)||(27656844-27656903)
chr7 (546-591)||(33602132-33602177)
[»] chr5 (5 HSPs)
chr5 (17-165)||(37605795-37605941)
chr5 (26-153)||(33360981-33361104)
chr5 (26-153)||(5742432-5742556)
chr5 (243-307)||(37606029-37606093)
chr5 (263-305)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (26-153)||(1228-1351)
[»] chr6 (2 HSPs)
chr6 (26-153)||(18085257-18085380)
chr6 (243-307)||(31559482-31559546)
[»] chr4 (1 HSPs)
chr4 (268-305)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 27658269 - 27658121
Alignment:
Q  17 gagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658269 gagacaggcggagtgaccgaaaatagcatgagagggtggcactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgtt 27658170  T
Q  117 cttgcttataggaaatgagtgaatcagagagagggaaggaaaacgaaac 165  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27658169 cttgcttataggaaatgagtgaatcagagagagagaaggaaaacgaaac 27658121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 504 - 595
Target Start/End: Complemental strand, 33602355 - 33602264
Alignment:
Q  504 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatttggaaaatcaacgtaacagagcaatttcgttttag 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33602355 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatctggaaaatcaacgtaacagagcaatttcgttttag 33602264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 325 - 438
Target Start/End: Complemental strand, 33602528 - 33602421
Alignment:
Q  325 aaaaacatatttaatcgtttaatatttcatttcactattttgctatttgccagctcatacttctaaccgtttcttattcacttttgccgccatataacaa 424  Q
    ||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33602528 aaaaacatatttaatcgtttaatatttcatttca------tgctatttgccagctcatacttctaatcgtttcttattcacttttgccgccatataacaa 33602435  T
Q  425 accatatttcattt 438  Q
    ||||||||||||||    
T  33602434 accatatttcattt 33602421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 302
Target Start/End: Complemental strand, 27656903 - 27656844
Alignment:
Q  243 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcatt 302  Q
    ||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  27656903 tattgaggaacagtctatggtatcatttttgtgtttgtatttttgtgtttacttatcatt 27656844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 591
Target Start/End: Complemental strand, 33602177 - 33602132
Alignment:
Q  546 ttgtagttttggatttggaaaatcaacgtaacagagcaatttcgtt 591  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  33602177 ttgtagttttggatctggaaaatcaacgtaacagagcaatttcgtt 33602132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 37605795 - 37605941
Alignment:
Q  17 gagacaggcggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgtt 116  Q
    |||| ||| |||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||    
T  37605795 gagataggtggagcgaccgaaaatagcatgag--ggtggcactgtacaaagatgaagaaggagtgacgagaacctatgagtgaatgaaagatgatttttt 37605892  T
Q  117 cttgcttataggaaatgagtgaatcagagagagggaaggaaaacgaaac 165  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||||    
T  37605893 cttgctcataggaaatgagtgattcagaaagagggaaggaaaacgaaac 37605941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 33360981 - 33361104
Alignment:
Q  26 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 125  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  33360981 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaat 33361076  T
Q  126 aggaaatgagtgaatcagagagagggaa 153  Q
     |||||||| ||||||||| ||||||||    
T  33361077 gggaaatgactgaatcagaaagagggaa 33361104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 5742556 - 5742432
Alignment:
Q  26 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 125  Q
    |||||||| | ||||||||||||||||||| |||| ||||||||||||   |||||| ||| | |||  |||||||||||||| ||| |||||| || ||    
T  5742556 ggagtgactggaaatagcatgagagggtggcactgcacaaagatgaag---gagtgatgagcaactactagtgaatgaaagatgattagttctttctcat 5742460  T
Q  126 aggaaatgagtgaatcagagagagggaa 153  Q
    ||||||| ||||||||||| ||||||||    
T  5742459 aggaaattagtgaatcagaaagagggaa 5742432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 37606029 - 37606093
Alignment:
Q  243 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctgt 307  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  37606029 tattgagtaacagtgtatggtgtcatatttgtgtttgtattattgtgtttacttatcattcctgt 37606093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 30891806 - 30891764
Alignment:
Q  263 tgtcatttttgtgtttgtatttttgtgtttacttatcattcct 305  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  30891806 tgtcgtttttgtgtttgtatttttgtgttcacttatcattcct 30891764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 1228 - 1351
Alignment:
Q  26 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 125  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  1228 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagatgatttgttcttgatcat 1323  T
Q  126 aggaaatgagtgaatcagagagagggaa 153  Q
     |||||||| ||||||||| ||||||||    
T  1324 gggaaatgactgaatcagaaagagggaa 1351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 18085257 - 18085380
Alignment:
Q  26 ggagtgaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttat 125  Q
    ||||||||||||| |||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | ||    
T  18085257 ggagtgaccgaaa-tagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaat 18085352  T
Q  126 aggaaatgagtgaatcagagagagggaa 153  Q
     |||||||| ||||||||| ||||||||    
T  18085353 gggaaatgactgaatcagaaagagggaa 18085380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 31559546 - 31559482
Alignment:
Q  243 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctgt 307  Q
    |||||||||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  31559546 tattgagtaacagtgtatggtgtcatatttatgtttgtattattgtgtttacttatcattcctgt 31559482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 7453604 - 7453567
Alignment:
Q  268 tttttgtgtttgtatttttgtgtttacttatcattcct 305  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7453604 tttttgtgtttgtatttttgtgttcacttatcattcct 7453567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University