View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20397_low_12 (Length: 277)
Name: NF20397_low_12
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 98 - 258
Target Start/End: Complemental strand, 34676112 - 34675951
Alignment:
| Q |
98 |
taagatgcataatattgggaggtggttggaaaagaagttcctaggggcatttaaatttaaggagaagactaggg-agtctattaatgatgtgaatcatca |
196 |
Q |
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| T |
34676112 |
taagatgcataatattgggaggtggtcggaaaagaagttcctaggggcatttaaatttaaggagaatactaggggagtctattaatgatgtgaatcatca |
34676013 |
T |
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| Q |
197 |
acacgtgtaaagaaatatttgtatcctaaaattgaaatgatagaataagggcaccacaaatt |
258 |
Q |
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| T |
34676012 |
acacgtgtaaggaaatatttgtatcccaaaattgaaatgatagaataagggcaccacaaatt |
34675951 |
T |
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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 34676452 - 34676366
Alignment:
| Q |
12 |
atcatcaataataggtaaatgattggaaatagattgacttgtgagatttcaaggaagttgcatagatcaaacacctaaagatttact |
98 |
Q |
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| T |
34676452 |
atcatcaataataggtaaatgattggaaatagattgacttgtgagatttcaaggaagttgcatagatcaaacacctaaaaatttact |
34676366 |
T |
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