View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20397_low_17 (Length: 209)
Name: NF20397_low_17
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 36568463 - 36568639
Alignment:
| Q |
15 |
caaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaac |
114 |
Q |
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| T |
36568463 |
caaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaac |
36568562 |
T |
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| Q |
115 |
atgcaggtagatatatcattatcaannnnnnnnnnnntaaagaccttgttcttttgttttgtttcatctttcacact |
191 |
Q |
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| T |
36568563 |
atgcaggtagatatatcattatcaaacacacacacactaaagaccttgttcttttgttttgtttcatctttcacact |
36568639 |
T |
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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 122
Target Start/End: Complemental strand, 21038455 - 21038358
Alignment:
| Q |
25 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggt |
122 |
Q |
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| T |
21038455 |
tattggatccctactccttctcagattcttattggtcctacacaattctcttgtcctgtttgctgcaaaaccttcaacagatacaacaacatgcaggt |
21038358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 41939369 - 41939469
Alignment:
| Q |
22 |
caatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcagg |
121 |
Q |
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| T |
41939369 |
caatattggatcccttctcctgctcaaatccttgttggtcctacccagttttcttgcactgtttgcaacaaaaccttcaaccgtttcaacaacatgcagg |
41939468 |
T |
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| Q |
122 |
t |
122 |
Q |
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| T |
41939469 |
t |
41939469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 41937599 - 41937702
Alignment:
| Q |
25 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggtag |
124 |
Q |
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|||||||||||||| ||| |||| ||||| || |||||||| ||||| || |||||| |||| | ||| || ||||||||||| ||||||||||||||| |
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| T |
41937599 |
tattggatccctacccctgctcagattctaatcggtccaacacagttttcatgccctctttgtttcaagaccttcaatagatacaacaacatgcaggtat |
41937698 |
T |
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| Q |
125 |
atat |
128 |
Q |
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|||| |
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| T |
41937699 |
atat |
41937702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 13518836 - 13518748
Alignment:
| Q |
25 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaa |
113 |
Q |
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|||||||| || || ||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| ||||| ||||| |
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| T |
13518836 |
tattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaa |
13518748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 13608369 - 13608281
Alignment:
| Q |
25 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaa |
113 |
Q |
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|||||||| || || ||||||||||||||||||||||| || || ||||| || ||||| ||||| ||||||||||| ||||| ||||| |
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| T |
13608369 |
tattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaa |
13608281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 22296719 - 22296658
Alignment:
| Q |
17 |
aaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgc |
78 |
Q |
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|||| ||||||||||| ||| | ||| ||||||| |||||||| ||||| |||||||||||| |
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| T |
22296719 |
aaggtcaatattggattccttcacctgctcaaatcctcattggaccaacacagttctcttgc |
22296658 |
T |
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