View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20397_low_3 (Length: 574)
Name: NF20397_low_3
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Complemental strand, 46909944 - 46909396
Alignment:
| Q |
17 |
attctccctcacaatgatcctcttcttaagaaatgtatagatcctatggatgctttggctaggtcaattataaattgggcagaaacaacagcaaaggtac |
116 |
Q |
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| T |
46909944 |
attctccctcacaatgatcctcttcttaagaaatgtatagatcctatggatgctttggctaggtcaattataaattgggcagaaacaacagcaaaggtac |
46909845 |
T |
|
| Q |
117 |
ctgggagattttagttttcattttttctatttctctccaaaatcttggcattataattggagcgctcatgtgnnnnnnngcagctccatgtgaatggacc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
46909844 |
ctgggagattttagttttcattttttctatttctctccaaaatcttggcattataattggagcactcatgtaaaaaaaagcagctccatgtgaatggact |
46909745 |
T |
|
| Q |
217 |
caaatactttccaatacatatatctctcaattcctctctttctctccatcatctatccatcctcaaattcggatcctctgcagctggctttatggtgtag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909744 |
caaatactttccaatacatatatctctcaattcctctctttccctccatcatctatccatcctcaaattcggatcctctgcagctggctttatggtgtag |
46909645 |
T |
|
| Q |
317 |
cctgtctatggttattctatatgaaagtgttgcagatttaaggattgattttatttgttacctagtcatgtttagtttttacttatctgttgttactcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909644 |
cctgtctatggttattctatatgaaagtgttgcagatttaaggattgattttatttgttacctagtcatgtttagtttttacttatctgttgttactcta |
46909545 |
T |
|
| Q |
417 |
atgagagttaagttagttgtttagcctatcagttagtattattttacttctgtgtttttctgttaggtagttagggtcgttatccacctcttcactcttg |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46909544 |
atgagagttaagttagttgtttagcctatcagttagtattattttacttctgtgtttttctgttaggtagttagggtggttatccacctcttcactcttg |
46909445 |
T |
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| Q |
517 |
tatatgtatattcacttttccattcattcaatgaagtaataagaattat |
565 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46909444 |
tatatgtatattcacttttccattcattcaatgaagtaataagaattat |
46909396 |
T |
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