View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20397_low_4 (Length: 510)
Name: NF20397_low_4
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 16 - 500
Target Start/End: Original strand, 39553276 - 39553759
Alignment:
| Q |
16 |
tttatctctctttctatgtgaataaaccacttattcgatcgtaaattgaactaaccatctattcaacaatattaacaatatttttaaatatgatta-tta |
114 |
Q |
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| T |
39553276 |
tttatctctctttttatgtgaataaaccacttattcgatcgtaaattgaactaaccatctattcaacaatattaacaatatttttaaacatgattaatta |
39553375 |
T |
|
| Q |
115 |
ggtgttataaatgtaagtaaaagtggatgtaataatattattaattattgttttataattttctagggtttatacatcatgtgatattccgaaactcatt |
214 |
Q |
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| T |
39553376 |
ggtgttacaaatgtaagtaaaagtggatgtaataatattattaattattgttttataattttctagggtttatacatcatgtgatattccgacactcatt |
39553475 |
T |
|
| Q |
215 |
ttgacaatgatacacatgacaccaaccataccagcgagcttaaatgtcaagatcatatcacttttacatgatataaaacaagcttttcaacccaaaaaat |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39553476 |
ttgacaatgatacacatgacaccaaccatatcagcgggcttaaatgtcaagatcatatcacttttacatgatataaaactagcttttcaacccaaaaaat |
39553575 |
T |
|
| Q |
315 |
atatataatactagccatgttatgaattattcacattttatcatgtctatatgaaagaatcattccttcatgaacctaagacattgtaatatgttatatt |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39553576 |
atatataatactagccatgttatgaattattcacattttatcatgtctatatgaaagaatcattccttcatgaacctaagatattgtaatatgttatatt |
39553675 |
T |
|
| Q |
415 |
atgcatcggatttggtccnnnnnnnnnnngttatattatgcatcggatgatattttttaggattagatgcagttttgatctctctg |
500 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39553676 |
atgcatcggatttggt--aaaaaaaaaaagttatattatgcatcggatgatattttttgggattagatgcagttttgatctctctg |
39553759 |
T |
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