View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20397_low_6 (Length: 410)

Name: NF20397_low_6
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20397_low_6
NF20397_low_6
[»] chr6 (2 HSPs)
chr6 (164-394)||(29645741-29645971)
chr6 (28-97)||(29645602-29645671)
[»] chr8 (9 HSPs)
chr8 (207-367)||(28711839-28711996)
chr8 (207-367)||(28719186-28719343)
chr8 (207-364)||(28726831-28726985)
chr8 (231-364)||(28700940-28701070)
chr8 (231-364)||(28731531-28731661)
chr8 (231-367)||(28644417-28644550)
chr8 (231-364)||(28625926-28626056)
chr8 (231-364)||(28740470-28740600)
chr8 (193-286)||(28636761-28636854)
[»] scaffold0591 (1 HSPs)
scaffold0591 (231-364)||(5228-5358)
[»] chr7 (1 HSPs)
chr7 (333-373)||(49110057-49110097)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 164 - 394
Target Start/End: Original strand, 29645741 - 29645971
Alignment:
Q  164 cttcatgtatgcaatgcagcttgcaatttctattgcacttcccatggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggt 263  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  29645741 cttcatgtatgcaatgcagattgcaatttctattgcacttcccatggcactccaatgtgcaattgatcttggtgtttttgaagtgttgcaaaaagccggt 29645840  T
Q  264 aaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctttcaaaatgttggatcgcattcttgctcttcttg 363  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29645841 aaaggtgctcaactctcggccgacgacatcgtgtcccgtctttccaacattaacaatccaaaagctttcaaaatgttggatcgcattcttgctcttcttg 29645940  T
Q  364 cctctcactcagtgcttaattgttcaatcat 394  Q
    ||||||||||| |||||||||||||||||||    
T  29645941 cctctcactcactgcttaattgttcaatcat 29645971  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 29645602 - 29645671
Alignment:
Q  28 catagggagataggaatatacacattcaagtcaatatggccagccttttaaattcaaagaatctcaattg 97  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  29645602 catagggagataggaatatacacaatcaagtcgatatggccagccttttaaattcaaagaatctcaattg 29645671  T

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Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 207 - 367
Target Start/End: Complemental strand, 28711996 - 28711839
Alignment:
Q  207 atggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtcttt 306  Q
    ||||||||||| | | ||| ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| || || | ||| |||||||    
T  28711996 atggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtcttt 28711897  T
Q  307 ccaacatcaacaatccagaagctttcaaaatgttggatcgcattcttgctcttcttgcctc 367  Q
    |   |  ||||||||  || |||  ||||||||||||||||||||||||| ||||||||||    
T  28711896 c---ctgcaacaatcttgatgctcccaaaatgttggatcgcattcttgctgttcttgcctc 28711839  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 207 - 367
Target Start/End: Complemental strand, 28719343 - 28719186
Alignment:
Q  207 atggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtcttt 306  Q
    ||||||||||| | | ||| ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| || || | ||| |||||||    
T  28719343 atggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtcttt 28719244  T
Q  307 ccaacatcaacaatccagaagctttcaaaatgttggatcgcattcttgctcttcttgcctc 367  Q
    |   |  ||||||||  || |||  ||||||||||||||||||||||||| ||||||||||    
T  28719243 c---ctgcaacaatcttgatgctcccaaaatgttggatcgcattcttgctgttcttgcctc 28719186  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 364
Target Start/End: Complemental strand, 28726985 - 28726831
Alignment:
Q  207 atggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtcttt 306  Q
    ||||||||||| | | ||| ||| |||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||| || || | ||| |||||||    
T  28726985 atggcactccattctgcaactgagcttggtgtatttgatgtgttgcaaaaagctggcaaaggtgctcaactctctgccgatgagattgcgtcccgtcttt 28726886  T
Q  307 ccaacatcaacaatccagaagctttcaaaatgttggatcgcattcttgctcttcttgc 364  Q
    |   |  ||||||||  || |||  ||||||||||||||||||||||| |||||||||    
T  28726885 c---ctgcaacaatcttgatgctcccaaaatgttggatcgcattcttgttcttcttgc 28726831  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 28701070 - 28700940
Alignment:
Q  231 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctt 330  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||      || |||||| || |||     
T  28701070 cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttc---ttgcagcaatcctgatgctc 28700974  T
Q  331 tcaaaatgttggatcgcattcttgctcttcttgc 364  Q
     |||||||||||||||||||||||||||||||||    
T  28700973 ccaaaatgttggatcgcattcttgctcttcttgc 28700940  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 28731661 - 28731531
Alignment:
Q  231 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctt 330  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||      || |||||| || |||     
T  28731661 cttggtgtttttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttc---ttgcagcaatcctgatgctc 28731565  T
Q  331 tcaaaatgttggatcgcattcttgctcttcttgc 364  Q
     ||||||||||||||||||||||| |||||||||    
T  28731564 ccaaaatgttggatcgcattcttgttcttcttgc 28731531  T

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Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 367
Target Start/End: Complemental strand, 28644550 - 28644417
Alignment:
Q  231 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctt 330  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||| || || ||||| ||| ||||      || |||||| || |||     
T  28644550 cttggtgtatttgatgtgttgcaaaaaactggtaaaggtgctcaactctctgccgatgagattgtgtcgcgtatttc---ttgcagcaatcctgatgctc 28644454  T
Q  331 tcaaaatgttggatcgcattcttgctcttcttgcctc 367  Q
     ||||||||||||||||||||||||| ||||||||||    
T  28644453 ccaaaatgttggatcgcattcttgctgttcttgcctc 28644417  T

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Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 28626056 - 28625926
Alignment:
Q  231 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctt 330  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||      || |||||| || |||     
T  28626056 cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttc---ttgcagcaatcctgatgctc 28625960  T
Q  331 tcaaaatgttggatcgcattcttgctcttcttgc 364  Q
     ||||||||||||||||||||||| |||||||||    
T  28625959 ccaaaatgttggatcgcattcttgttcttcttgc 28625926  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 28740600 - 28740470
Alignment:
Q  231 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctt 330  Q
    |||||||| ||||| |||||||||||||||||||||| |||||||||||| ||| | || || | ||| ||| ||||      || |||||| || |||     
T  28740600 cttggtgtatttgatgtgttgcaaaaagctggtaaagatgctcaactctctgcccatgagattgcgtcgcgtatttc---ttgcagcaatcctgatgctc 28740504  T
Q  331 tcaaaatgttggatcgcattcttgctcttcttgc 364  Q
     |||||||||||||||||||||||||||||||||    
T  28740503 ccaaaatgttggatcgcattcttgctcttcttgc 28740470  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 28636854 - 28636761
Alignment:
Q  193 ctattgcacttcccatggcactccaatgttcaattgatcttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccga 286  Q
    |||||||  |||| |||||||| |||| | ||| ||| |||||||||||||| || |||||||||||||| |||| |||||||||||| |||||    
T  28636854 ctattgcgtttccaatggcactacaatctgcaactgagcttggtgtttttgatgttttgcaaaaagctggaaaagatgctcaactctctgccga 28636761  T

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Target: scaffold0591 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 364
Target Start/End: Original strand, 5228 - 5358
Alignment:
Q  231 cttggtgtttttgaagtgttgcaaaaagctggtaaaggtgctcaactctcggccgacgacatcgtgtctcgtctttccaacatcaacaatccagaagctt 330  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || || | ||| ||| ||||      || |||||| || |||     
T  5228 cttggtgtatttgatgtgttgcaaaaagctggtaaaggtgctcaactctctgccgatgagattgcgtcgcgtatttc---ttgcagcaatcctgatgctc 5324  T
Q  331 tcaaaatgttggatcgcattcttgctcttcttgc 364  Q
     |||||||||||||||||||||||||||||||||    
T  5325 ccaaaatgttggatcgcattcttgctcttcttgc 5358  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 49110097 - 49110057
Alignment:
Q  333 aaaatgttggatcgcattcttgctcttcttgcctctcactc 373  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  49110097 aaaatgttagatcgcattcttgctcttcttgcctctcactc 49110057  T

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