View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20397_low_7 (Length: 345)
Name: NF20397_low_7
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_low_7 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 32 - 345
Target Start/End: Original strand, 27777610 - 27777923
Alignment:
| Q |
32 |
atagtaaaaatgaatccctaataaaaaaacacaattatttnnnnnnnnnngaaagtaatcttctatttatattgtaaataacatccataaatataaaaag |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27777610 |
atagtaaaaatgaatccctaataaaaaaacacaattattttttttttaaa-aaagtaatcttctacttatattgtaaataacatccataaatataaaaag |
27777708 |
T |
|
| Q |
132 |
ccatgagctactataaggatgaatttatttgcaataataacaatcaattttaatttggttgtaacaaaaagccagtatatttttccaatg-nnnnnnnng |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27777709 |
ccatgagctactataaggatgaatttatttgcaataataacaataaattttaatttggttgtaacaaaaagccagtatatttttccaatgtttttttttg |
27777808 |
T |
|
| Q |
231 |
aaggaaggaaaaaataaatctgctaaaagtgaagttattttgtaaactcgcacatatattaatttaatttaacgcagctactataaggatgaaattatac |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27777809 |
aaggaaggaaaaaataaatctgctaaaagtgaagttattttgtaaactcgcacatatattaatttaatttaacgcagctactataaggatgaaattatac |
27777908 |
T |
|
| Q |
331 |
tactagccaaacaaa |
345 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
27777909 |
tactagccaaacaaa |
27777923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 6223862 - 6223902
Alignment:
| Q |
90 |
tcttctatttatattgtaaataacatccataaatataaaaa |
130 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
6223862 |
tcttctatttatattgtgaatgacatccataaacataaaaa |
6223902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 14643683 - 14643641
Alignment:
| Q |
88 |
aatcttctatttatattgtaaataacatccataaatataaaaa |
130 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
14643683 |
aatcttatatttatattgtaaataacatctataaacataaaaa |
14643641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 4206395 - 4206351
Alignment:
| Q |
85 |
agtaatcttctatttatattgtaaataacatccataaatataaaaa |
130 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
4206395 |
agtaatcttctatttaaattgt-aataatatccataaatataaaaa |
4206351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 17115389 - 17115429
Alignment:
| Q |
88 |
aatcttctatttatattgtaaataacatccataaatataaa |
128 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
17115389 |
aatcttctatttaaattgtaaataatatccataaacataaa |
17115429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University