View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20397_low_8 (Length: 331)
Name: NF20397_low_8
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 5726950 - 5727254
Alignment:
| Q |
12 |
catcaacatgaaccctaaatagattggacttcaccctattgtagtgaacaaaaactagcttaatgtttatatctactgggtaagtgttaatggttctgtg |
111 |
Q |
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| T |
5726950 |
catcaacatgaaccctaaatagattggacttcaccttattgtagtaaactaaaactagcttaatgtttatatctactgggtaagtgttaatggttttgtg |
5727049 |
T |
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| Q |
112 |
gtgtggtttacaaatttaccaaacgcactaatttatacaaggttttatgcattttggactac--nnnnnnnntcatgtatttaatttttcagattatata |
209 |
Q |
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| T |
5727050 |
gtgtggtttgcaaatttaccaaacgcactaatttatataaggttttgtgcattttggactacaaaaaaaaaatcatgtatttaatttttcagattatata |
5727149 |
T |
|
| Q |
210 |
atctgaaatataccacatccccaaatgcacaagttattacacggtcttggcatgtttcaaatcatattaactcgaatcagtcaaaatactatttttggga |
309 |
Q |
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| T |
5727150 |
atctgaactatgccacatcccaaaatgtacaaattattacacggtcttggcatgtttcaaatcata-taactggaaccagtcaaaatactgtttttgggg |
5727248 |
T |
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| Q |
310 |
tgatat |
315 |
Q |
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|||||| |
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| T |
5727249 |
tgatat |
5727254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 35375874 - 35375776
Alignment:
| Q |
66 |
ctagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaatttaccaaacgcactaatttatacaaggttttatgcatt |
164 |
Q |
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| T |
35375874 |
ctagtttagtgttcatatctactggataattgttcatgattttgtgatgtggtttgcaaatgaaccaaacacacaaatttatagaaggttttgtgcatt |
35375776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 12989774 - 12989830
Alignment:
| Q |
64 |
aactagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggttt |
120 |
Q |
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| T |
12989774 |
aactagcttagtgtttatatctattggataaatgttaatggttatgtggtgtggttt |
12989830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 13063395 - 13063457
Alignment:
| Q |
64 |
aactagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaat |
126 |
Q |
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| T |
13063395 |
aactagcttggtgtttatatctattggataaatgttaatggttatgtggtgtggtttgcaaat |
13063457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 41931466 - 41931549
Alignment:
| Q |
64 |
aactagcttaatgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaatttaccaaacgcactaatttat |
147 |
Q |
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| T |
41931466 |
aactagtttaatgtttatatcaactgaataagtgttcatggttttgttgtgtggtttgcaaatgaaccaaacgtacaaatttat |
41931549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 11883542 - 11883594
Alignment:
| Q |
75 |
tgtttatatctactgggtaagtgttaatggttctgtggtgtggtttacaaatt |
127 |
Q |
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|||||| ||||||||| |||||||| ||| || ||||||||||||||| |||| |
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| T |
11883542 |
tgtttacatctactggataagtgttcatgattttgtggtgtggtttaccaatt |
11883594 |
T |
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