View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20397_low_9 (Length: 310)
Name: NF20397_low_9
Description: NF20397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20397_low_9 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 438189 - 438470
Alignment:
| Q |
18 |
ggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactctagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
438189 |
ggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgctttctaactctagc |
438288 |
T |
|
| Q |
118 |
tgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
438289 |
tgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaa |
438388 |
T |
|
| Q |
218 |
ggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctgacgagtatt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
438389 |
ggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctacggcctgacgagtatt |
438470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 28608715 - 28608432
Alignment:
| Q |
18 |
ggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactctagc |
117 |
Q |
| |
|
||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||| | |
|
|
| T |
28608715 |
ggttgcatattcggacacaacatttaacgtttctactctgatagcatcatatgcctctctgagtgcttcaaatttattatcaatactttctaactctatc |
28608616 |
T |
|
| Q |
118 |
tgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaa |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
28608615 |
tgggatcttgtaagattttgtgttccagattggccactaggcttctccatatgagaagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaa |
28608516 |
T |
|
| Q |
218 |
ggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctgacgagtattat |
301 |
Q |
| |
|
| |||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
28608515 |
gtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcttgacgagtattat |
28608432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 13660074 - 13659803
Alignment:
| Q |
30 |
tgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactctagctgggattgtgta |
129 |
Q |
| |
|
|||||||||||||| |||| |||||| | |||||||||||||||| | ||||||||| ||||| ||||| ||||| ||||| |||||| |||| |
|
|
| T |
13660074 |
tgacacaacatttaaggtttcgactctgacagcatcatatgcctctccaagtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgta |
13659975 |
T |
|
| Q |
130 |
agattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaaggccaaaaacat |
229 |
Q |
| |
|
|||||||| | ||||| |||| ||||| || |||||||||| |||||||| |||||| |||||| || ||||| ||||||||| | ||||||| |
|
|
| T |
13659974 |
agattttgcgctccaggttggttactaggcttatccatatgagcggcaacaagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacat |
13659875 |
T |
|
| Q |
230 |
gtataggggaaattctagtggcattgaaatattcaatgaggctaataacccctgcggcctgacgagtattat |
301 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||| |||||| |||||||||| ||||| |||| ||||| |
|
|
| T |
13659874 |
gtataggggaaattctagtagcattgaaagattcaacgaggctgataacccctgtagcctggcgagcattat |
13659803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 13652586 - 13652322
Alignment:
| Q |
18 |
ggttgcatagtttgacacaacatttagtgtttggactctaatagcatcatatgcctctttgaatgcttcaaaggtattggtaatgttttctaactctagc |
117 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||| |||||| || |||||| ||||||||||| ||||| ||||| ||||| ||||| | |
|
|
| T |
13652586 |
ggttgcataggatgacacaacatttaaggttcggactctaacagcatcgtacgcctctccaaatgcttcaaatgtattattaatgctttcttgctctacc |
13652487 |
T |
|
| Q |
118 |
tgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacgatttcaacaaggtaaa |
217 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| |||||| || |||||||||| ||||||||| ||||| |||||| || ||||| |||||||| |
|
|
| T |
13652486 |
tgggaactggtaagattttgtgctccaggttgcacactaggcttatccatatgagcagcaacaagtgcaccggtacgtcctttgagttcaataaggtaaa |
13652387 |
T |
|
| Q |
218 |
ggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataacccct |
282 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| | | ||||||| | ||||||||| |
|
|
| T |
13652386 |
gtgaaaaaacatgtataggggaaattctagtggcattgaaagactgaatgaggttgataacccct |
13652322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University