View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_high_13 (Length: 411)
Name: NF20398_high_13
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 23 - 393
Target Start/End: Complemental strand, 37491854 - 37491483
Alignment:
| Q |
23 |
gacaccggggtacgccttcgatcagaagtgtaattgctac-tatatatatacaagacataagatttgaagaagaaaaagaaattgagattaatccttacc |
121 |
Q |
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| T |
37491854 |
gacaccggggtacaccttccatcagaagtgtatttgctatatatatatatacaagacataagatttgaaaaagaaaaagaaattgagattaatccttacc |
37491755 |
T |
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| Q |
122 |
aaaccaagaatgtggaatccccctacccccaagaaacgctgctgttacaacaaaaatcacccaagatcaagaaacacaaattccattaatgagaatgaaa |
221 |
Q |
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| T |
37491754 |
aaaccaagaatgtggaatccccctacccccaagaaacgctgctgttacaacaaaaatcacccaagatcaagaaacacaaattccattaatgagaatgaaa |
37491655 |
T |
|
| Q |
222 |
gcaacaaaagaaaatgaagattcagaagtgaattaatattgttggctaacacaacacaagcaagatggtgaagaataagtcatcaaagtataccatatag |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37491654 |
gcaacaaaagaaaatgaagattcagaagtgaattaatattgttggctaacacaacacaagcaagatggtgaagaataagtcatcaaattataccatatag |
37491555 |
T |
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| Q |
322 |
tagcaacaagcaaggtaggttgagtgtgacatgattaatgatatacttgacgtatagaaatatagtagtagc |
393 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37491554 |
tagcaacaagcaaggtagattgagtgtgacatgattaatgatatacttgacgtatagaaatataggagtagc |
37491483 |
T |
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