View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_high_16 (Length: 375)
Name: NF20398_high_16
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_16 |
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| [»] scaffold0685 (1 HSPs) |
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| [»] scaffold0099 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 358
Target Start/End: Original strand, 24893015 - 24893355
Alignment:
| Q |
9 |
tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893015 |
tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa |
24893114 |
T |
|
| Q |
109 |
gacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag |
208 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893115 |
gacagcaaagtatttataagaaaacctttat---------cttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag |
24893205 |
T |
|
| Q |
209 |
aaagagaaagcctgtcttacgtgctccagttgaacgacacttcgctttccctgactcccatgatcaagcagtgaaacttgttttacagcaaaaaagaatc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893206 |
aaagagaaagcctgtcttacgtgctccagttgaacgacacttcgctttccctgactcccatgatcaagcagtgaaacttgttttacagcaaaaaagaatc |
24893305 |
T |
|
| Q |
309 |
catctccacaatggtaatcagaaagggaataaaactggtagttaacactt |
358 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24893306 |
catctctacaatggtaatcagaaagggaataaaactggtagttaacactt |
24893355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 94 - 352
Target Start/End: Original strand, 24920980 - 24921229
Alignment:
| Q |
94 |
aaagatattgcacaagacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaata |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
24920980 |
aaagatattgcacaagacagcaaagtatttataagaaaacctttat---------cttcataaaaggatttcgaatattggaaaattgaagtatacaata |
24921070 |
T |
|
| Q |
194 |
attacgaaggaatagaaagagaaagcctgtcttacgtgctccagttgaacgacacttcgctttccctgactcccatgatcaagcagtgaaacttgtttta |
293 |
Q |
| |
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|||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24921071 |
attatgaagcaatagaaagagaaagcctatcttacgtgctccagttgaacgacactttgctttccctgactcccttgatcaagcagtgaaacttgtttta |
24921170 |
T |
|
| Q |
294 |
cagcaaaaaagaatccatctccacaatggtaatcagaaagggaataaaactggtagtta |
352 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24921171 |
cagcaaaaaagaatccatctctacaatggtaatcagaaagggaataaaactggtagtta |
24921229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 94 - 352
Target Start/End: Original strand, 24997067 - 24997316
Alignment:
| Q |
94 |
aaagatattgcacaagacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaata |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
24997067 |
aaagatattgcacaagacagcaaagtatttataagaaaacctttat---------cttcataaaaggatttcaaataatggaaaattgaagtatacaata |
24997157 |
T |
|
| Q |
194 |
attacgaaggaatagaaagagaaagcctgtcttacgtgctccagttgaacgacacttcgctttccctgactcccatgatcaagcagtgaaacttgtttta |
293 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||| |
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| T |
24997158 |
attatgaagcaatagaaagagaaagcctgtcttacgtgctccagttgaacgacactttgttttccctgactcccttgatcaagcagtgaaacttgtttta |
24997257 |
T |
|
| Q |
294 |
cagcaaaaaagaatccatctccacaatggtaatcagaaagggaataaaactggtagtta |
352 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
24997258 |
cagcaaaaaagaatccatctctacaatggtaatcagaaagggaataaaactggtagtta |
24997316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 145 - 350
Target Start/End: Original strand, 24903376 - 24903596
Alignment:
| Q |
145 |
ttatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatagaaagagaaagcctgtct---------------tacg |
229 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||| |||| || ||||| |||| ||||||||||| |||| ||||| |||| |
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| T |
24903376 |
ttatcttcataaaaggattttgattaatggaaagttgaattataaaaaaattatgaagcaatagaaagagtaagcatgtctgactgtcttaactcttacg |
24903475 |
T |
|
| Q |
230 |
tgctccagttgaacgacacttcgctttccctgactcccatgatcaagcagtgaaacttgttttacagcaaaaaagaatccatctccacaatggtaatcag |
329 |
Q |
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||||||| ||||| |||||| |||||||| || |||| |||||||||| |||| |||||||||||||||||||||||||||||| || |||| ||||| |
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| T |
24903476 |
tgctccaattgaaaaacactttgctttccccgaatcccttgatcaagcaatgaagcttgttttacagcaaaaaagaatccatctctgcagtggttatcag |
24903575 |
T |
|
| Q |
330 |
aaagggaataaaactggtagt |
350 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
24903576 |
aaagggaataaaactggtagt |
24903596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 24996953 - 24997037
Alignment:
| Q |
9 |
tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagt--agtgagaaaacatatagat |
91 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
24996953 |
tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgagagtgaggtagaagtaaagtgagaaaacatatagat |
24997037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 24920868 - 24920950
Alignment:
| Q |
9 |
tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagt--agtgagaaaacatatagat |
91 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
24920868 |
tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgag--tgaggtagaagtaaagtgagaaaacatatagat |
24920950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 24903265 - 24903320
Alignment:
| Q |
9 |
tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgag |
64 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
24903265 |
tcgaacaatattctcgtgttcaaactgactcagaagtgcaatttcctgagagtgag |
24903320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 4650 - 4863
Alignment:
| Q |
9 |
tcgaagaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650 |
tcgaacaatattctcatgttcaaactgactcagaagtgcaatttcctgagaatgaggaagaagtagtgagaaaacatatagattgaaagatattgcacaa |
4749 |
T |
|
| Q |
109 |
gacagcaaagtatttataagaaaacctttatctaaattatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4750 |
gacagcaaagtatttataagaaaacct---------ttatcttcataaaaggatttcgatcaatggaaaattgaagtatacaataattacgaaggaatag |
4840 |
T |
|
| Q |
209 |
aaagagaaagcctgtcttacgtg |
231 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
4841 |
aaagagaaagcctgtcttacgtg |
4863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 145 - 342
Target Start/End: Original strand, 33949 - 34152
Alignment:
| Q |
145 |
ttatcttcataaaa-ggatttcgatcaatggaaaa-ttgaagtatacaataattacgaaggaatagaaagagaaagcctgtcttacgtgctccagttgaa |
242 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||| ||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
33949 |
ttatcttcataaaaaggatttcgaatattggaaaaattgaagtatacaataattatgaagcaatagaaagagaaagcctatcttacgtgctccagttgaa |
34048 |
T |
|
| Q |
243 |
cgacac-ttcgctttccctgactcccatgatcaagcagtgaaacttgtttt-acag-caaaaaagaatccatct-ccacaatggtaatcagaaagggaat |
338 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
34049 |
cgacacttttgctttccctgactcccttgatcaagcagtgaaacttgttttaacagacaaaaaagaatccatctactacaatggtaatcagaaagggaat |
34148 |
T |
|
| Q |
339 |
aaaa |
342 |
Q |
| |
|
|||| |
|
|
| T |
34149 |
aaaa |
34152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 33780 - 33872
Alignment:
| Q |
10 |
cgaagaatattctcatgtt-caaactgactcagaagtgc-aatttcctgagaatgaggaagaagt---agtgag-aaaacatatagattgaaa |
96 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||| |||||| ||||||||||||| |||| |
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| T |
33780 |
cgaacaatattctcatgttacaaactgactcagaagtgctaatttcctgagagtgaggtagaagtaaaagtgagaaaaacatatagatagaaa |
33872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 33022110 - 33022192
Alignment:
| Q |
230 |
tgctccagttgaacgacacttcgctttccctgactcccatgatcaagcagtgaaacttgttttacagcaaaaaagaatccatc |
312 |
Q |
| |
|
|||||||||||| ||||||| | |||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
33022110 |
tgctccagttgatagacactttgttttccctgttccccttgatcaagcaaggaaacttcttttacagcaaaaaagaatccatc |
33022192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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