View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_high_18 (Length: 361)
Name: NF20398_high_18
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 7717826 - 7718146
Alignment:
| Q |
18 |
atgagatacatatgaaccttaacctaatnnnnnnngtgttgataacgtaatgtaacgtgaattgatttcttggggtaatgaattgtactagtttaaattt |
117 |
Q |
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| T |
7717826 |
atgagatacatatgaaccttaacctaataaaaaaagtgttgataatgtaatgtaacgtgaattggtttcttggggtaatgaattgtactagtttaaattt |
7717925 |
T |
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| Q |
118 |
gatcatcgtagtttacaaagggaatagagagcatcttttgaaaagcggtggtcgtcccgtttgtcgaactgtgttttttcatcaatctcaatacgatctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7717926 |
gatcatcgtagtttacaaagggaatagagagcatcttttgaaaagcggtggtcgtcccgtttgtcgaactgtgttttttcatcaatctcaatacgatctg |
7718025 |
T |
|
| Q |
218 |
attctttactcttctccgtgaatgaatgtttttgaatctttccatcgaattatcgatattccagaggactttcttttgtttgggcttggttatgattgat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7718026 |
attctttactcttctccgtgaatgaatgtttttgaatctttccatcgaattatcgatattccagaggactttcttttgtttgggcttggttatgattgat |
7718125 |
T |
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| Q |
318 |
tatgtggtggggtatagtact |
338 |
Q |
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||||||||||||||||||||| |
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| T |
7718126 |
tatgtggtggggtatagtact |
7718146 |
T |
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