View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_high_19 (Length: 351)
Name: NF20398_high_19
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 15302352 - 15302151
Alignment:
| Q |
1 |
tcctttgaaggtgcctgactcttccaaa-gagaaacaaaaacactttcatcgaactcactcaccccacccccatccgtacacaatcacacaatctttcta |
99 |
Q |
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| T |
15302352 |
tcctttgaatgtgcctgactcttccaaaagagaaacaaaaacactctcatcgaactcactcaccccacccccatccttacacaatc--------tttcta |
15302261 |
T |
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| Q |
100 |
ttagcccatatgaagaacccttttccaaagtgaatgatccttttgaagtaccgccacctctatctggctaggagactcaaattgataacaactctaacac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
15302260 |
ttagcccatatgaagaacccttttccaaagtgaatgatccttttgaagtaccaccacctctatttggttaggagactcaaattgataacaactctaacac |
15302161 |
T |
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| Q |
200 |
ctagccctcc |
209 |
Q |
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|||||||||| |
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| T |
15302160 |
ctagccctcc |
15302151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15294748 - 15294705
Alignment:
| Q |
1 |
tcctttgaaggtgcctgactcttccaaagagaaacaaaaacact |
44 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
15294748 |
tcctttggaggtgccggactcttccaaagagaaacaaaaacact |
15294705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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