View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20398_high_20 (Length: 344)
Name: NF20398_high_20
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 329
Target Start/End: Complemental strand, 49520357 - 49520035
Alignment:
| Q |
9 |
ttattctatgtcgaggctgcaaattgaatagcaaagtttactatcttagaattgaaagtaaaaacgattgctaatctatttttccttttat---actaga |
105 |
Q |
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| T |
49520357 |
ttattctatgtcgaggctgcaaattgaatagcaaagtttactatcttagaattgaaagtaaaa-cgattgctaatctattttcccttttattatactaga |
49520259 |
T |
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| Q |
106 |
tactaagtgagaaattgaaaggatacacatgattgctactttgtgtgaccagatatattttactcgtttttagacagtagattacctttcatatattctg |
205 |
Q |
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| T |
49520258 |
tactaagtgagaaattgaaaggatacacatgattgctactttgcgtggccagatatattttactcgtttttagacagtagattacctttcatatattctg |
49520159 |
T |
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| Q |
206 |
ctctcctctactgtgataacaagttgagaaattacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgttggg |
305 |
Q |
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| T |
49520158 |
ctctcctctactgtgataacaagttgagaaattacatgctcaacttgtttgctgaatgccaattttcagcattaaccagcttgccaactagcatgttggg |
49520059 |
T |
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| Q |
306 |
gtattggatgggttagttattgtt |
329 |
Q |
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| T |
49520058 |
gtattggatgggttagttattgtt |
49520035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 49528929 - 49528798
Alignment:
| Q |
14 |
ctatgtcgaggctgcaaatt-gaatagcaaagtttactatcttagaattgaaagta--aaaacgattgctaatctatttttccttttatactagatacta |
110 |
Q |
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| T |
49528929 |
ctatgtcgaggctacaaatttggatagcaagttttactatctttaaattggaagtataaaaatgattgctactttattttcgcttttatagtcgatacta |
49528830 |
T |
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| Q |
111 |
agtgagaaattgaaaggatacacatgattgct |
142 |
Q |
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| T |
49528829 |
agtggaaaattgaaaggataaacatgattgct |
49528798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 49531097 - 49531046
Alignment:
| Q |
167 |
actcgtttttagacagtagattacctttcatatattctgctctcctctactg |
218 |
Q |
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| T |
49531097 |
actcgtttttagacaatacattacctttcatatgttctgctctcctctactg |
49531046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 49530957 - 49530860
Alignment:
| Q |
232 |
agaaattacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgt-tggggtattggatgggttagttattgtt |
329 |
Q |
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| T |
49530957 |
agaaattacatgctctacttgttcgccaaatgccaattttaag-atttaccagcttgctaacaagcatgtgaggggcattgtatgggttagttattgtt |
49530860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 49525141 - 49525070
Alignment:
| Q |
238 |
tacatgctcaacttgtttgccgaattccaattttcagcattaaccagcttgccaactagcatgttggggtattg |
311 |
Q |
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| T |
49525141 |
tacatgctcaacttgtttgttg--tgccaattttcagcattgaccagcttgctgactagcatgttgcggtattg |
49525070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 49531261 - 49531144
Alignment:
| Q |
14 |
ctatgtcgaggctgcaaattgaatagcaaagtttactatcttagaattgaaagta--aaaacgattgctaatctatttttccttttatactagatactaa |
111 |
Q |
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| T |
49531261 |
ctatgtcgaggctacaaattggctagcag-gtttactatctataaattgaaagtataaaaacgattactacgttatttttgcttttatactaggttctac |
49531163 |
T |
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| Q |
112 |
gtgagaaattgaaaggata |
130 |
Q |
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||| |||||||||||||| |
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| T |
49531162 |
gtggaaaattgaaaggata |
49531144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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