View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20398_high_21 (Length: 343)
Name: NF20398_high_21
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 38454720 - 38455048
Alignment:
| Q |
1 |
tcaaacgtggaaaaatatttccattgcatgttagtattgaataactaatctgcatgtgatgttttgtttaaagaacaatactcacgagtgacgagtcatg |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38454720 |
tcaaaggtggaaaaatatttccattgcatgttagtattgaataactaatttacatgtgatgttttgtttaaagaacaatactcacgagtcacgagtcatg |
38454819 |
T |
|
| Q |
101 |
acagtgtaactnnnnnnnnnnnnnnnnnnttgtgtgccttgaagattttgctgatccagccagctacagcgtctccataatttcctgaacgttgttgtgg |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38454820 |
acagtgtaactataaaaaagaataaaaaattgtgtgccttgaagattttgctgatccagccagctacagcgtctccataatttcctgaacgttgttgtgg |
38454919 |
T |
|
| Q |
201 |
gcataaaaatgggacaaagaaatcgcaaacttgggtcacacggtaaaggtatgtgccaaacatggtgggaggcataaggaaagggacaactgaatcttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38454920 |
gcataaaaatgggacaaagaaatcgcaaacttgggtcacacggtaaaggtatgtgccaaacatggtgggaggcataaggaaagggacaactgaatcttga |
38455019 |
T |
|
| Q |
301 |
acttgtatcacacaaggcaaagacatgtg |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38455020 |
acttgtatcacacaaggcaaagacatgtg |
38455048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University