View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20398_high_26 (Length: 313)
Name: NF20398_high_26
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 164 - 300
Target Start/End: Original strand, 41278489 - 41278625
Alignment:
| Q |
164 |
ttcatattatcaatacaatatattttgttaaatcttttaattctgctaatttctttttctcatatcaatacaatataattttgtaaaataattcataata |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41278489 |
ttcatattatcaatacaatatattttgtaaaatcttttaattctactaatttctttttctcatatcaatacaatataattttgtaaaataattcataatc |
41278588 |
T |
|
| Q |
264 |
tatctttaatacaaagttaacaatatattttttagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41278589 |
tatctttaatacaaagttaacaatatattttttagaa |
41278625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 41278063 - 41278100
Alignment:
| Q |
7 |
caaggaagttgccacaaatatggtaaggcatttaaaag |
44 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41278063 |
caaggaagttgccacaaacgtggtaaggcatttaaaag |
41278100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 21772753 - 21772721
Alignment:
| Q |
238 |
ataattttgtaaaataattcataatatatcttt |
270 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
21772753 |
ataattttgtaaaataattcataatatctcttt |
21772721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 5925473 - 5925505
Alignment:
| Q |
238 |
ataattttgtaaaataattcataatatatcttt |
270 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
5925473 |
ataattttgtaaaataattcataatatctcttt |
5925505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University