View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20398_high_27 (Length: 310)
Name: NF20398_high_27
Description: NF20398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20398_high_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 300
Target Start/End: Complemental strand, 7723761 - 7723485
Alignment:
| Q |
21 |
gtcgctgtgccggcggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaaattgaaact |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
7723761 |
gtcgctgtgccagcggcagaagttgctcttctctcttccttcttgaatctgatcccacatgcattgcataatgactgtaattcc-attcaaattgaaact |
7723663 |
T |
|
| Q |
121 |
atcaaaagattgaaataaagttatatatttggaatgtatatatttagagtannnnnnnnacctttgggcctcgagggccgttcctccaaagcggtgtgga |
220 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7723662 |
atcaaaagattgaaataaagttatatata-gttatat-tatatttagagtattttttttacctttgggcctcgagggccgttcctccaaagcggtgtgga |
7723565 |
T |
|
| Q |
221 |
ggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7723564 |
ggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgttgttattattggtacttgcacgtgttgcctttg |
7723485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 32956020 - 32956086
Alignment:
| Q |
45 |
gctcttctctcttccttcttgaatctgatcccacatgcattgcatagtgactgtaattcccattcaa |
111 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||| | |||||| |
|
|
| T |
32956020 |
gctcttctctcttccttcttgtatctaatcccacaagcattgcatagtgactgcaatttcaattcaa |
32956086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 32956322 - 32956410
Alignment:
| Q |
180 |
acctttgggcctcgagggccgttcctccaaagcggtgtggaggtggtgtcacagtttgcacatctacgagcaagaagagaatcattgtt |
268 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| ||||| || |||| ||||||| | ||||| | |||||||||||||||||||||||| |
|
|
| T |
32956322 |
accttagggccacgaggaccattcctccaaaggggtgtagaagtggagtcacagctagcacaacgacgagcaagaagagaatcattgtt |
32956410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University